Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq211 143 6e-29 seq1 122 2e-22 >seq211 Length=45189 Score = 143 bits (158), Expect = 6e-29 Identities = 206/287 (72%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 7443 GTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTAT 7502 |||||| | ||||||| ||| | ||||| |||||||| ||||||||| ||||| Sbjct 12728 GTTATACCTTATATTTGCATCTTTTGCAGGTATGATAGGTACAGGATTTTCTATTATTAT 12669 Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562 | | ||||| | || | ||||| |||||| |||| |||| || ||| | || || Sbjct 12668 CCGTATGGAATTGGGTGATACGGGTATTCAAATTTTGAATGGTGATCATCAATTGTATAA 12609 Query 7563 CGTTA-TTATT-ACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 | | ||| | || || ||||| ||| | |||||||| ||| | |||||||| | | Sbjct 12608 --TAACTTAGTGACAGCTCATGCTTTTCTAATGATTTTTTTTATGGTTATGCCAGCATTA 12551 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || |||| | |||||| | | ||||| ||||||||||||||||| Sbjct 12550 ATTGGTGGTTTTGGTAATTATATGGTTCCTATTTTAATTGGGGCTCCTGATATGGCTTTC 12491 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || | | || ||||| |||||||| || | || ||||| ||||| Sbjct 12490 CCTCGTTTAAATAATATTAGTTTTTGGGTATTGCCTCCTTCATTATT 12444 Score = 96.9 bits (106), Expect = 8e-15 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || || || |||||||| ||||||||||| || || || | |||||| ||||| |||| | Sbjct 12048 TCTGGGTGTCCAAAAAACCAGAATAAATGCTGGTATAGAACAGGATCCCCTCCCCCTGCT 12107 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 || ||||| || |||||||||| |||||||| ||||| |||| Sbjct 12108 GGTTCAAAGAAAGTAGTATTAAAGTTTCTATCTGTTAATAACA 12150 >seq1 Length=4772237 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| ||||| || || |||| ||||| || | | || | || || Sbjct 1125460 AGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 1125401 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || || ||||| |||||||| Sbjct 1125400 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC 1125341 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||||| ||| |||| || || || | ||||| ||| Sbjct 1125340 TGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGACCTCGAGGGTGATGGTC 1125281 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 1125280 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527930228516