Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 >seq2 Length=3916072 Score = 109 bits (120), Expect = 4e-19 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||||| | || |||||| | |||||| || || |||| ||| || || | || Sbjct 3896373 GGCTCGCGCTTGAGCTGCTCCTTCAGCGCATCAACATGGTTCTTGTACACATGGGTGTCA 3896314 Query 29684 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29743 |||| | |||||| | ||| ||||| || || ||| || || |||| | |||| Sbjct 3896313 CCCATGATGTGGATCAGCTCACCCGGCCGGAGGCCAGTGCAATGGGCAATCAGGCACGTC 3896254 Query 29744 AGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGG 29803 || || | |||||||||||||| || ||||| |||||||| | || | || | |||| Sbjct 3896253 AGCAGCGCATAGCTGGCGATGTTGAATGGCACACCGAGCCCAAGATCACACGAGCGCTGG 3896194 Query 29804 TAGAGCTGGCACGAGAGCTCTC------CGTCGCTCACGTAAAACTGACACATGGCATGG 29857 |||| |||||| || ||||| | || | ||||||||||||| ||| ||| Sbjct 3896193 TAGAACTGGCAGGACAGCTCGCCACGCTCGATGTTCACGTAAAACTGGGCCATCAGGTGG 3896134 Query 29858 CACGGAGGAAGGGCCAT 29874 || ||||| || ||||| Sbjct 3896133 CAGGGAGGGAGAGCCAT 3896117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/149 (77%), Gaps = 8/149 (5%) Strand=Plus/Plus Query 53529 AGATGGGCGACAAGTTTGCATC-CTTCACGGCGCAAAAGGGGACA-TGCGGAGCGGTCCT 53586 |||| |||||||||||||| || | |||||| ||| ||||| || || | | | ||| Sbjct 915194 AGATCGGCGACAAGTTTGCCTCGCGTCACGG-GCAGAAGGGCACCGTGGGCATCA--CCT 915250 Query 53587 GACT-CAGGAGGACATGCCCTTCGACA-AGGACGGGGTGGTGCCCGACCTCATCATCAAC 53644 | |||||||||||||||||| ||| |||| || | ||||| ||||| |||||||| Sbjct 915251 ACCGGCAGGAGGACATGCCCTTC-ACAGAGGAGGGCATTGTGCCGGACCTGATCATCAAT 915309 Query 53645 CCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||| ||| |||| || | ||||| || Sbjct 915310 CCCCATGCCATTCCTTCGCGAATGACCGT 915338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162140675604