Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2 118 8e-22 >seq2 Length=3916072 Score = 118 bits (130), Expect = 8e-22 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| | || |||||| |||||||| || || || | | ||| || || | ||| Sbjct 3896373 GGCTCGCGCTTGAGCTGCTCCTTCAGCGCATCAACATGGTTCTTGTACACATGGGTGTCA 3896314 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 |||| | |||||| | ||| ||||| || || ||| || || |||| | |||| Sbjct 3896313 CCCATGATGTGGATCAGCTCACCCGGCCGGAGGCCAGTGCAATGGGCAATCAGGCACGTC 3896254 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | |||||||||||||| || || || |||||||| | || | ||| | |||| Sbjct 3896253 AGCAGCGCATAGCTGGCGATGTTGAATGGCACACCGAGCCCAAGATCACACGAGCGCTGG 3896194 Query 27298 TAGAGCTGACACGAGAGCTCTCCA---TC---GCTTACGTAAAACTGACATATGGCGTGG 27351 |||| ||| || || ||||| ||| || | | ||||||||||| || |||| Sbjct 3896193 TAGAACTGGCAGGACAGCTCGCCACGCTCGATGTTCACGTAAAACTGGGCCATCAGGTGG 3896134 Query 27352 CACGGAGGAAGAGCCAT 27368 || ||||| |||||||| Sbjct 3896133 CAGGGAGGGAGAGCCAT 3896117 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/149 (77%), Gaps = 8/149 (5%) Strand=Plus/Plus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603 |||| || ||||||||||| || | |||||| ||| ||||| || |||| ||| Sbjct 915194 AGATCGGCGACAAGTTTGCCTCGCGTCACGG-GCAGAAGGGCACC-GTGGGCATCACCT- 915250 Query 48604 ACC--CAGGAGGACATGCCCTTCGACA-AGGACGGGGTGGTGCCCGACCTCATCATCAAC 48660 ||| |||||||||||||||||| ||| |||| || | ||||| ||||| |||||||| Sbjct 915251 ACCGGCAGGAGGACATGCCCTTC-ACAGAGGAGGGCATTGTGCCGGACCTGATCATCAAT 915309 Query 48661 CCCCACGCCTTTCCCTCCAGGATGACCGT 48689 ||||| ||| |||| || | |||||||| Sbjct 915310 CCCCATGCCATTCCTTCGCGAATGACCGT 915338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506236279034