Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 163 6e-35 seq3 145 2e-29 seq7 98.7 2e-15 >seq1 Length=4772237 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 1125476 ACCACCACGCAGGCGGAGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGA 1125417 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| || |||| || || || ||| || Sbjct 1125416 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGG 1125357 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || || |||| |||||| | ||| || | ||||| Sbjct 1125356 GATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGAC 1125297 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1125296 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1125249 >seq3 Length=3619281 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| || ||| Sbjct 1037340 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 1037399 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || || ||| || |||||||||||||| || ||||| || || |||| ||| Sbjct 1037400 AGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGGCGTCG 1037459 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || | ||| || | || || || || ||||| |||||||| || | ||||||||||| Sbjct 1037460 ATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGAAA 1037519 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 1037520 ATCTGCAT 1037527 >seq7 Length=2157034 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||| | ||| || | || || || ||||||||||| | || ||| Sbjct 326759 GAGAAGGAGTTCCTCACCGAGGCCCTGCCCGTTCGCCTGATCGGCATGAACGGCGACCTC 326818 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || || ||||| || || || || || | | |||| ||| || | | ||| Sbjct 326819 ATGTGCCAGTACATCGAGTTTGTGGCCGACCGCCTGCTGGTGGAGCTCGGCTGCCCGAAG 326878 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 || || ||| | |||||||||||| || ||||| | || |||||||| || || Sbjct 326879 GTCTACAACGCGGAGAACCCCTTCGACTTCATGGACATGATCAGTCTCCAGGGCAAGACC 326938 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||||||||| ||||| ||| | || || || |||||| Sbjct 326939 AACTTCTTCGAGAAGCGCGTCGGTGACTACCAGAAGGCC 326977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736329971956