Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 132 1e-25 seq3 122 2e-22 >seq1 Length=4772237 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 1125252 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCCTCTGAC 1125311 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| |||||| |||||||||||||| || || ||||| || || ||||| Sbjct 1125312 TCCATCGATGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGCAG 1125371 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| || || | || || | || || ||| || Sbjct 1125372 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAACATC 1125431 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 1125432 CAGAAGGACTCCACCCTCCACCTTGT 1125457 >seq3 Length=3619281 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || |||||||| ||||| || ||| ||| Sbjct 1037524 CAGATTTTCGTTAAGACCCTTACCGGTAAGACCATCACCCTTGAGGTTGAGCCCTCTGAC 1037465 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||| |||||||||||||| || || ||||| || || ||||| Sbjct 1037464 TCGATCGACGCCGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGCAG 1037405 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 1037404 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 1037345 Query 178104 CAAAA 178108 || || Sbjct 1037344 CAGAA 1037340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727899519516