Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fonticula_20alba_20[genbank_20GCA_5F000388065.2_202014-04-24] 214 sequences; 31,296,464 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 140 3e-28 seq1 127 2e-24 >seq3 Length=3619281 Score = 140 bits (154), Expect = 3e-28 Identities = 147/191 (77%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 41674 CTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 41733 |||||| ||||| ||||||||||||||||| | || |||||||||||||||||||| || Sbjct 1037339 CTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAAT 1037398 Query 41734 CAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGA 41793 ||||||||| || || | ||| | | |||||||||| ||| | || || | ||| || Sbjct 1037399 CAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGGCGT 1037457 Query 41794 C-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | | | ||| | ||| ||||| | || || || ||||| || || ||||| |||| Sbjct 1037458 CGATCGAGTCAGAGGGCTCAACCTCAAGGGTGATGGTCTTACCGGTAAGGGTCTTAACGA 1037517 Query 41853 AAATCTGCATG 41863 ||||||||||| Sbjct 1037518 AAATCTGCATG 1037528 >seq1 Length=4772237 Score = 127 bits (140), Expect = 2e-24 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| |||||||| ||||| ||||| ||| Sbjct 1125475 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTGGAGTCCTTCTGGATGTTGTAGTCCGAG 1125416 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| ||||||||||| || || | ||| Sbjct 1125415 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGATCAGGGGGG 1125356 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | ||| | | | | ||| | ||| || Sbjct 1125355 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGGCATCGATGGAGTCAGAGGGCTCGAC 1125297 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATGG 41873 ||| | || || || || || || || ||||| ||||| |||||||| | | ||||| Sbjct 1125296 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCCTGTTGATGG 1125238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302763336800