Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq62 141 1e-28 >seq62 Length=89227 Score = 141 bits (156), Expect = 1e-28 Identities = 410/617 (66%), Gaps = 23/617 (4%) Strand=Plus/Plus Query 16939 ATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTC-TGC 16997 ||||| |||| | || ||| || || || || || ||||| || || || |||| || Sbjct 48107 ATGTTGAAGAAGACTATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGA 48166 Query 16998 TGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATA 17057 | || | || || || || || | || |||||| || ||||||||||||||||||| Sbjct 48167 T-ATCAACTCATTGGAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATA 48225 Query 17058 TCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTT 17117 | | || || |||||||||||||| || || || | |||||| || | ||| || | Sbjct 48226 TGGAACAAAAAGAACCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCT 48285 Query 17118 CGGCGTACGTCGCGTCTTTGTTAC---GAATCCATTTCTGCACCCACTCGGCTTTTTGCT 17174 | || | | || || || | |||||||| ||| || ||||| | | Sbjct 48286 CAGCAAAACT-GC-----TGGAACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTT 48339 Query 17175 TTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTT-TCCTGTAGGTCGAT 17232 | | ||| | |||| ||||| | || || | ||||| | | || |||| Sbjct 48340 TCACACAAGTAAGATTTTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGA- 48398 Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 ||||| |||||||| |||| ||||||||| || |||| || ||||| || ||||| Sbjct 48399 -ATATAAGTATCGATAAGTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTG 48457 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG--AATCGTTCCGCT 17350 ||| || || || || || ||||| | || ||||||||| ||| || || | || Sbjct 48458 AAAACCATAGAAACAACGCGCTTCGGGTACTTGAACTTCA--GTACTAAAACGAGCTGCC 48515 Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAA 17410 | ||||| ||||||||||| || || || ||||| ||||| | ||| || || Sbjct 48516 AAGTTTTCATTCACGATGCCATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAG 48575 Query 17411 TATTTTTC-GTCCGGTGTA-AGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468 | || || | || | |||| ||| || |||||||| ||||| || |||| Sbjct 48576 TGTTGCTCTGATGAATGGAGAGAA--TTCCAATCTCGTAAATCTTGGGATAGGTCGACTT 48633 Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 |||| ||||| |||||||| | || |||||| | | ||| || | | ||| Sbjct 48634 CTTCAACTGTCCAGAAACTAGCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATC 48693 Query 17529 GTATGGGGAATACAACA 17545 |||||| |||| |||| Sbjct 48694 TTATGGGAAATAAAACA 48710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542798784440