Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq62 190 2e-43 seq26 136 4e-27 >seq62 Length=89227 Score = 190 bits (210), Expect = 2e-43 Identities = 408/596 (68%), Gaps = 19/596 (3%) Strand=Plus/Plus Query 16191 TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTG 16249 || ||| || || || || || ||||| | ||||| |||| || | || | || ||| Sbjct 48121 TATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGAT-ATCAACTCATTG 48179 Query 16250 GAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC 16309 || ||||| | || ||||| || |||||||||||||| ||||| | | ||| || Sbjct 48180 GAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAA 48239 Query 16310 CCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA 16369 || ||||||||||| || || || | |||||| || | ||| || || || | | || Sbjct 48240 CCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACT-GCT 48298 Query 16370 TCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT 16429 || || |||||||| ||| || ||||| | ||| | |||| | || Sbjct 48299 GGAACAT--CGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTT 48356 Query 16430 TCTATGGCCTTAAACAATTT-CTCTTTTTCCTGA-ATATCGATTATATACGTATCAATCA 16487 || ||||| | ||||| | ||||| ||| ||||| ||||| ||||| || | Sbjct 48357 TCGATGGCGTAGAACAAACGACGCTTTT--CTGCCATATCTCGAATATAAGTATCGATAA 48414 Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 ||||| ||||||||| || |||| || || || || |||||||| |||||||| || | Sbjct 48415 GTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAAC 48474 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTA--AAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 | || || | || ||| ||||| ||| ||| || | |||| ||| ||||||||||| Sbjct 48475 GCGCTTCGGGTACTTGAACTTCA--GTACTAAAACGAGCTGCCAAGTTTTCATTCACGAT 48532 Query 16606 ACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGT 16665 || ||| || |||||||| ||||| | || || | | | | || || |||| Sbjct 48533 GCCATCAGAAGCTGCAAAAAATGCCAAAACATG--GGAT-ATAAAGTGTTGCTCTGATGA 48589 Query 16666 A---AGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 | ||| || ||||||| |||||||| ||||| || |||||||| ||||| || Sbjct 48590 ATGGAGAGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAA 48649 Query 16723 GCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||| | || |||||| | || ||| || | | ||| ||||||||||| Sbjct 48650 ACTAGCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAATA 48705 >seq26 Length=183063 Score = 136 bits (150), Expect = 4e-27 Identities = 351/528 (66%), Gaps = 9/528 (2%) Strand=Plus/Plus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || ||| || ||||| ||||| | ||||| || | ||||| || || || || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 || |||||||| ||||| || || ||||| ||||| | | ||| || || ||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||||| ||||| |||| ||||| || | ||| || || || | | ||| ||| Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGG-ATT 77271 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | |||| | || |||| | |||||| || ||| || || Sbjct 77272 --GGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 16438 CTTAAACAATTTCTCTTTTTCCTGA--ATATCGATTATATACGTATCAATCAGTAAACTG 16495 | ||| || | ||||| ||| || |||| ||||| ||||| || || | | Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGA--ATATAAGTATCGATAAGAAGAGAA 77387 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| || || || || || || ||||| ||||||||||| || ||||| || || Sbjct 77388 TAAGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCT 77447 Query 16556 GCTATTTGTACTTCCACG-TAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | || || || | |||| |||||| ||| || |||||||| || || ||||| Sbjct 77448 GGAATCTGGACAT-CACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGA 77506 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | ||||| || ||||||| ||| |||||||| || || | | | | | Sbjct 77507 AGATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTT 77566 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 |||||||| || || | |||| ||| | |||||| | |||||||| Sbjct 77567 CCAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAA 77614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411631969560