Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq62 210 3e-49 seq26 188 8e-43 seq19 82.4 9e-11 >seq62 Length=89227 Score = 210 bits (232), Expect = 3e-49 Identities = 377/548 (69%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 24171 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 24230 || || || ||||| || || || || ||||| | ||| || || || | |||||||||| Sbjct 48168 ATCAACTCATTGGAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATG 48227 Query 24231 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCT 24290 || ||| || ||||||||||| || ||||||||||| |||||||||| | | || Sbjct 48228 GAACAAAAAGAACCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCA 48287 Query 24291 CCATAACCGGCGCTGT--CAT-GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 24347 || ||| | ||| ||| ||||||| ||| || |||||| || |||||||| ||| Sbjct 48288 GCAAAACTG---CTGGAACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACA 48344 Query 24348 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 24407 |||| | | || || || | || | | ||||| ||||| || ||| Sbjct 48345 CAAGTAAGATTTTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAA 48404 Query 24408 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 24467 ||||| || | | | |||||||||||||| | ||||| || ||||| ||||| || Sbjct 48405 GTATCGATAAGTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCA 48464 Query 24468 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCA 24527 |||||||| | || |||| | || ||||| ||| ||| || |||| || |||||| Sbjct 48465 TAGAAACAACGCGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCA 48524 Query 24528 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 24587 ||||| || || ||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 48525 TTCACGATGCCATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCT 48584 Query 24588 TCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 24647 || || ||||||||| | ||||| |||| || |||||||| |||||| Sbjct 48585 GATGAATGGAGAGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTC 48644 Query 24648 CAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAA 24707 || || || || || |||||| | | ||| || | |||| || ||||| Sbjct 48645 CAGAAACTAGCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAAT 48704 Query 24708 ATAACAAA 24715 | |||||| Sbjct 48705 AAAACAAA 48712 >seq26 Length=183063 Score = 188 bits (208), Expect = 8e-43 Identities = 359/529 (68%), Gaps = 0/529 (0%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 |||||||| || || || || | ||| || || | ||| | || || || || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 | ||| ||||| || || | |||||| | |||||||||||| ||| || |||||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT 24311 || ||||| ||||| || ||||| || | | | || || || ||| | || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG 77273 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| || |||||| | ||||| || | | |||||| || || || || | | Sbjct 77274 ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCA 77333 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || | | ||||| | | |||| || ||| ||||| || | |||| ||| || Sbjct 77334 AATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTT 77393 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 ||||||||||| ||||| || || ||||||||||| || ||||||| || || | |||| Sbjct 77394 TCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATC 77453 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || |||||||| |||||| | || || || |||||||| | |||| Sbjct 77454 TGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCA 77513 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 24611 || || |||||||| || || |||| || |||| | | ||| |||||||| Sbjct 77514 AAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCT 77573 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | | || | |||| ||| | |||||| | |||||||| || |||| Sbjct 77574 TCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 >seq19 Length=190679 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 ||| |||| || | || |||||||| || ||||| || | ||||||||| || || Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 ||| || ||||||||||| || || | || || ||| || ||||| || |||| | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGC 53880 |||||||| || || | ||||| ||| || Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718386481840