Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq62 120 3e-22 seq9 102 8e-17 >seq62 Length=89227 Score = 120 bits (132), Expect = 3e-22 Identities = 286/431 (66%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 |||| ||||| || || || |||||||| || || || ||| | ||||| | Sbjct 48558 TGGCATTTTTTGCAGCTTCTGATGGCATCGTGAATGAAAACTTGGCAGCTCGTTTTAGTA 48499 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 || || || || |||| ||||| || ||||| || |||||||| || ||||| || | Sbjct 48498 CTGAAGTTCAAGTACCCGAAGCGCGTTGTTTCTATGGTTTTCAGATGGCTATGGAAAATG 48439 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGC 116939 | || ||||||||||| | || ||||| || || | || | || || |||| Sbjct 48438 TACATTCGGAAATGTACGCTTTACTTATCGATACTTATATTCGAGATATGGCAGAAAAGC 48379 Query 116940 TCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGC 116999 |||||||| |||||||||| | | | || || ||| |||| || || ||| | Sbjct 48378 GTCGTTTGTTCTACGCCATCGAAAATCTTACTTGTGTGAAAAAGAAAGCGGATTGGTCTT 48319 Query 117000 TGCGCTGGAT-CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCC 117058 | ||||| || | || | || | ||||| | || ||||| || || Sbjct 48318 TAAAATGGATACGATGTTCCAG----CAGTTTTGCTGAGCGTTTAGTTGCCTTTGCAGCA 48263 Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118 || || || | |||||||| || ||| ||||||||||| | |||||||| ||| Sbjct 48262 GTAGAAGGGATATTCTTTTCTGGTTCTTTTTGTTCCATATTTTGGTTAAAGAAACGGGGC 48203 Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178 | ||||| || || |||||| ||| ||| | || || | || || || ||||||| Sbjct 48202 TTGATGCCTGGTCTTACTTTCTCCAATGAGTTGATATCACGAGATGAAGGCTTGCATTGT 48143 Query 117179 GACTTTGCCTG 117189 || ||||| || Sbjct 48142 GAATTTGCTTG 48132 >seq9 Length=249065 Score = 102 bits (112), Expect = 8e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||||||||| || || || ||||| || || || || || | || || ||| | Sbjct 143948 AAAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACC 144007 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | || | || ||||| ||||| || |||| ||||| || ||||| ||| | | Sbjct 144008 CTCAGATACTATTGAAAACG-TCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAG 144066 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||||| | || | || || |||||| |||| || | || || | |||| Sbjct 144067 ACCAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACT 144126 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| || || || ||| | || || || | |||||||| |||||||| ||| Sbjct 144127 ACAATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGC 144179 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || ||||| || || || || || | || || ||| || | Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || ||||| ||||| || |||| ||||| || || || ||| | ||||| Sbjct 144240 GATACTATTGAAAACG-TCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCA 144298 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || || |||||| |||| || | || || | ||||| || Sbjct 144299 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAA 144358 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || || ||| | || || || | |||||||| |||||||| ||| Sbjct 144359 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGC 144407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216411376080