Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6 158 2e-33 seq54 127 3e-24 seq9 127 3e-24 seq63 105 1e-17 seq2 86.0 9e-12 >seq6 Length=291449 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || | || || ||||| ||||| | || ||||| | | Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| || |||||||||||||||||||| || || |||||| Sbjct 274379 GATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 274438 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||||||||| ||||| || || || || | |||| | ||||||||| Sbjct 274439 CAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAAT 274498 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || ||||| ||||||||||| | ||| |||| ||||||| Sbjct 274499 ATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGGTATTA 274550 >seq54 Length=107229 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || ||||| ||| | || | ||| | Sbjct 11244 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11185 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | || || || |||||||||||||| || || ||||| || Sbjct 11184 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11125 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || |||||| | || || |||| || || ||| ||||| Sbjct 11124 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11065 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 |||||| ||||| |||||| | || ||||| || ||| | |||| |||| Sbjct 11064 TATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGGTA 11015 Score = 120 bits (132), Expect = 5e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || ||||| ||| | || | ||| | Sbjct 11472 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11413 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | || || || |||||||||||||| || || ||||| || Sbjct 11412 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11353 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || |||||| | || || |||| || || ||| ||||| Sbjct 11352 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11293 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 |||||| ||||| |||||| | || ||||| | ||||| Sbjct 11292 TATTCAGAAAGAGTCAACTCTTCACTTGGTGCTGCGTTT 11254 Score = 120 bits (132), Expect = 5e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || ||||| ||| | || | ||| | Sbjct 11700 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11641 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || |||||||||||||| || || ||||| || Sbjct 11640 TGATACTATTGAGAATGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11581 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || |||||| | || || |||| || || ||| ||||| Sbjct 11580 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11521 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 |||||| || || |||||| | || ||||| | ||||| Sbjct 11520 TATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTT 11482 Score = 107 bits (118), Expect = 3e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || ||||| ||| | || | ||| | Sbjct 11928 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11869 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| || | || || || |||||||||||||| || || || || || Sbjct 11868 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGACCA 11809 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || |||||| | || || |||| || || || ||||| Sbjct 11808 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTATAA 11749 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 |||||| || || |||||| | || ||||| | ||||| Sbjct 11748 TATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTT 11710 >seq9 Length=249065 Score = 127 bits (140), Expect = 3e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || ||||| ||| | || ||||| | Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || |||||||| || |||||||| || || || ||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||| || || ||| |||| || || ||| |||||| Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 ||||||||||| || || | || ||||| || ||||| Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTT 144397 Score = 127 bits (140), Expect = 3e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || || || ||||| ||| | || ||||| | Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || |||||||| || |||||||| || || || ||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||| || || ||| |||| || || ||| |||||| Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144587 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 ||||||||||| || || | || ||||| || ||||| Sbjct 144588 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTT 144625 Score = 116 bits (128), Expect = 6e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| || || || || ||||| ||| | || ||||| | Sbjct 143951 AATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTC 144010 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | || || |||||||| || ||||| || || || || || Sbjct 144011 AGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 144070 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| || ||||| || || ||| | || || || ||| || || Sbjct 144071 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTACAA 144130 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 |||||||||||| || || | || ||||| || ||||| Sbjct 144131 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTT 144169 >seq63 Length=104598 Score = 105 bits (116), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 124555 AGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATT 124614 ||||||| || || || || || ||| | || |||| | ||||| ||| || Sbjct 60553 AGACACTTACTGGGAAGACCATTACTTTGGAAGTTGAGCCTTCCGATACTATTGAAAACG 60612 Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 |||| || || ||||| || |||||||| || || ||||||||| | | || |||| Sbjct 60613 TAAAGTCCAAGATACAAGACAAGGAAGGTATCCCTCCGGATCAACAACGTTTGATATTTG 60672 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAA 124734 |||| || ||| |||| ||| | |||| || ||||||||||| || |||||||| | Sbjct 60673 CAGGCAAGCAACTAGAAGATGGAAGAACTTTGTCTGATTATAATATCCAGAAAGAATCCA 60732 Query 124735 CTTTGCATTTGGT 124747 ||||||| ||||| Sbjct 60733 CTTTGCACTTGGT 60745 >seq2 Length=309569 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 205730 TATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 |||||||||| |||||||||||||||||||| ||||| || || |||||||| ||||||| Sbjct 186702 TATATTTAGCTCCAAAATGACGCCATTGAAAGCCATACACAGGTCCTAAATCCCCTTCTT 186643 Query 205790 TTCTATCATTAAAA 205803 ||| | |||||| Sbjct 186642 CTCTGT--TTAAAA 186631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451911094400