Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 129 9e-25 seq63 104 3e-17 seq54 104 3e-17 seq9 86.0 9e-12 >seq6 Length=291449 Score = 129 bits (142), Expect = 9e-25 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || || ||||||||||||||||| ||||| ||||||||||| ||| Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || || || ||||| |||||||| | ||| || ||||| |||||| Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| ||| ||| ||| Sbjct 274425 ATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACT 274366 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||| || ||||| || || || ||||| | ||||||||||| Sbjct 274365 TCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq63 Length=104598 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || ||||| |||||||| ||||||||||| || | |||||| | ||| || Sbjct 60746 TACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTC 60687 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||| || || ||||| ||||| | ||| ||||||||||| || ||||| || ||||| Sbjct 60686 TAGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 60627 >seq54 Length=107229 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | || ||||| || | ||| || ||||| |||||||| ||||| Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGAT 11076 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || | |||||| |||||||| || || | ||| || || |||||| Sbjct 11077 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11136 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| ||| ||||||| Sbjct 11137 ATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACT 11196 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || || || || ||||| | ||||| | || ||||||||| Sbjct 11197 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| || ||||| |||||||| ||||| ||||| | | || || Sbjct 11263 ACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCA 11322 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||| |||||||| || || | ||| || || ||||||||||||||||||||||| Sbjct 11323 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGT 11382 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| ||| ||||||||| || || || || || Sbjct 11383 ATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11442 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | ||||| | || ||||||||| Sbjct 11443 CCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| || || || |||||||| ||||| ||||| | | || || Sbjct 11491 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCA 11550 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||| |||||||| || || | ||| || || ||||||||||||||||||||||| Sbjct 11551 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGT 11610 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| ||| ||||||||| || || || || || Sbjct 11611 ATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11670 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | ||||| | || ||||||||| Sbjct 11671 CCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/210 (67%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| || || || |||||||| || || ||||| | | || || Sbjct 11719 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCA 11778 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||| |||||||| || || | ||| || || ||||||||||||||||||||||| Sbjct 11779 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGT 11838 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| ||| ||||||||| || || || || || Sbjct 11839 ATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11898 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | ||||| | || ||||||||| Sbjct 11899 CCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 >seq9 Length=249065 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | ||||| ||||| ||||| || ||||| | ||| | || ||| Sbjct 144163 AACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCT 144104 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| |||||||||||||| | ||| || || || ||||| ||||| || ||| Sbjct 144103 TCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 144044 Query 146186 TG 146187 || Sbjct 144043 TG 144042 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | ||||| ||||| |||||||| ||||| | ||| | | ||| Sbjct 144391 AACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCT 144332 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| |||||||||||||| | ||| || || || ||||| ||||| || ||| Sbjct 144331 TCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 144272 Query 146186 TG 146187 || Sbjct 144271 TG 144270 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| || | ||||| ||||| |||||||| ||||| | ||| | | ||| Sbjct 144619 AACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCT 144560 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| |||||||||||||| | ||| || || || ||||| ||||| || ||| Sbjct 144559 TCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 144500 Query 146186 TG 146187 || Sbjct 144499 TG 144498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743522375663360