Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq62 251 7e-62 seq26 215 5e-51 >seq62 Length=89227 Score = 251 bits (278), Expect = 7e-62 Identities = 413/587 (70%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| |||||||| | ||| ||||||| || | || || || || || | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || |||||||| || ||||| |||||||||||||| | | || || || ||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 || || || ||||| ||||| || | ||| || || |||| ||| | ||| | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAA-ACTGC-TGGAACATCG-T 48308 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||||||| || ||| || | ||| ||||| | | || | |||| || || | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || ||| | ||| ||| || | ||| || ||||| |||||||| |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 || || |||| ||||||||||| |||||||||||||| ||||| | ||||| | | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 14564 TGTACCTCTG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || || || | | ||||| | | ||||| |||||||| || || |||||| |||||| Sbjct 48489 TGAACTTCAGTACTAAAA-CGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGC 48547 Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT--TCATTGCTGAGTTTTTTCCAA 14680 |||||||||||| | | ||||||| ||||||| | | || ||| |||||| Sbjct 48548 AAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATG--GAGAGAATTCCAA 48605 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 || |||||| | || || || ||||| ||||||||||| |||||||| | || | Sbjct 48606 TCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGT 48665 Query 14741 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||||| | | ||||||||| ||||| ||| ||||| | ||||| Sbjct 48666 TTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 >seq26 Length=183063 Score = 215 bits (238), Expect = 5e-51 Identities = 367/528 (70%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 |||||| ||||| |||||||| | || ||||| | |||||| || || || || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 ||||||||||| | ||||| ||||| ||||||||||| | | || || || ||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||||||||||| || |||||||| || | ||| || || |||| || || | | Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGC--AGAGGAT 77270 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | |||||| || |||||| | || ||||| | |||| || || ||| || || Sbjct 77271 TG-GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 | ||||||| | |||| |||| || | | ||| || ||||| ||||| | ||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 |||| || || || |||||||| ||||| ||||| ||||||||||||| ||||||| Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 || || || |||||||||| || | || || ||| || || || || Sbjct 77450 AATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGA 77509 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC--TGAGTTTTTTC 14677 |||||| || ||||||| || ||| || | |||| || ||| | | ||| ||| Sbjct 77510 TGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATC--TGCATTCAATTTCTTC 77567 Query 14678 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725 ||||| | || || | || | ||||| ||| ||| | ||||||||| Sbjct 77568 CAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAA 77615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||||||||| | |||| || ||||| ||||| || || ||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 ||||| ||||||| |||||| ||| || ||| ||| | || | | | | Sbjct 76817 TCCATCCAATCAAACGGATTTCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAAC 76876 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 14088 || | |||||||| ||||||||||| ||| ||| | ||||| |||||| ||||| Sbjct 76877 AAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTAT 76932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342989304440