Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq62 178 1e-39 seq9 109 5e-19 >seq62 Length=89227 Score = 178 bits (196), Expect = 1e-39 Identities = 367/543 (68%), Gaps = 5/543 (1%) Strand=Plus/Minus Query 57591 GCAGAAGCATCGTTT-TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTG 57649 || ||||| | |||| ||||| || |||||||| ||||| || | ||| | | ||||| Sbjct 48661 GCGGAAGC-TAGTTTCTGGACAGTTGAAGAAGTCGACCTATCCCAAGATTTACGAGATTG 48603 Query 57650 GGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGC 57709 | |||| ||| | ||| ||| | | ||||| || || ||||| ||||| || || Sbjct 48602 GAATTCTCTCCATTCATCAGAGCAACACTTTATATCCCATGTTTTGGCATTTTTTGCAGC 48543 Query 57710 ATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGAC 57769 || ||||| || || || || || |||| | | ||| ||||| ||||| | Sbjct 48542 TTCTGATGGCATCGTGAATGAAAACTTGGCAGCTCGTTTTAGTACTGAAGTTCAAGTACC 48483 Query 57770 GGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 || ||| | || || || || ||||| |||| || ||||| || ||||| |||||||| Sbjct 48482 CGAAGCGCGTTGTTTCTATGGTTTTCAGATGGCTATGGAAAATGTACATTCGGAAATGTA 48423 Query 57830 TTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGC 57889 | |||| |||||||| || | || | | || || ||| | ||||| |||| Sbjct 48422 CGCTTTACTTATCGATACTTATATTCGAGATATGGCAGAAAAGCGTCGTTTGTTCTACGC 48363 Query 57890 GATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 ||||||| | | | ||||| || || ||||| | ||||||||| | | Sbjct 48362 CATCGAAAATCTTACTTGTGTGAAAAAGAAAGCGGATTGGTCTTTAAAATGGATACGATG 48303 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 ||| || || || ||| | || | || || || || || ||||| |||||||| Sbjct 48302 TTCCAG---CAGTTTTGCTGAGCGTTTAGTTGCCTTTGCAGCAGTAGAAGGGATATTCTT 48246 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 ||| || ||| | ||||||||| | |||||||| ||| ||||||| || || || Sbjct 48245 TTCTGGTTCTTTTTGTTCCATATTTTGGTTAAAGAAACGGGGCTTGATGCCTGGTCTTAC 48186 Query 58070 GTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAAT 58129 || ||| ||||||||||| || || || || | ||| ||| ||||| ||||| | Sbjct 48185 TTTCTCCAATGAGTTGATATCACGAGATGAAGGCTTGCATTGTGAATTTGCTTGCCTTTT 48126 Query 58130 GTA 58132 ||| Sbjct 48125 GTA 48123 >seq9 Length=249065 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| || || || || || || | || |||||||| || Sbjct 144179 CATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTC 144238 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| ||||| | || ||||||||||| | || || ||||| Sbjct 144239 AGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCA 144298 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || ||||| |||||||||||||| | ||| || || ||||| Sbjct 144299 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAA 144358 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || || ||||| |||| | | ||||||| || Sbjct 144359 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144406 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| || || |||||||| || || || || || || | || |||||||| Sbjct 143948 AAAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACC 144007 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | | |||| ||||| | || |||||||||||| | || || || Sbjct 144008 CTCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGA 144067 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| || ||| | || || ||||| |||||||||||||| ||| || || || Sbjct 144068 CCAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTA 144127 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| || || ||||| |||| | | ||||||| || Sbjct 144128 CAATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144178 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||| || || || || || || | || |||||||| || Sbjct 144407 CATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTC 144466 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| ||||| | || ||||||||||| | || || ||||| Sbjct 144467 AGATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCA 144526 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || ||||| |||||||||||||| | ||| || || ||||| Sbjct 144527 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAA 144586 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || || ||||| |||| | | ||||||| || Sbjct 144587 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763987289360