Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq26 118 2e-21 seq62 95.1 2e-14 >seq26 Length=183063 Score = 118 bits (130), Expect = 2e-21 Identities = 340/521 (65%), Gaps = 4/521 (1%) Strand=Plus/Minus Query 101545 TTTTTGGACATTGGAAGAGATTGATTTCGAAAGGGATCCTAAAGATTGGGAGAAACTCAC 101604 ||||||||| ||||| || ||||| || || |||||||| ||||| | | Sbjct 77615 TTTTTGGACTGCTGAAGAAATAGATTTATCGAGTGACTTGGAAGATTGGAAGAAATTGAA 77556 Query 101605 TCAAGATGAGAAGGATTTCATTCTCCAGATTCTGGCGTTCTTTGCATCCTCTGACGGAAT 101664 | ||||||| |||||||| || | |||| ||||||||||| || |||||||| Sbjct 77555 TGCAGATGAGCGCCATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCGACGGAAT 77496 Query 101665 TGTAATTGAAAATCTTACAACACGTCTTCGTCAAGTGGCGCAGATTCCAGAAGCGAGGAG 101724 ||| | || || ||| || | | || ||| | | |||||||||||||| | | Sbjct 77495 TGTTTTGGAGAACCTTGCAGAAAGATTTTGTCGTGATGTCCAGATTCCAGAAGCACGATG 77436 Query 101725 TTTCTTTGACTTCCAAGTTGGAATGGAGAGTATTCAT--GGCAACGTCTACGGAGAACTG 101782 ||| | || || ||| | | |||||| | ||||||| || ||| | | | || Sbjct 77435 TTTTTATGGATTTCAAATAGCAATGGAAAATATTCATTCGGAAACTTATTCTCTT--CTT 77378 Query 101783 ATTGATAGACTGGTGCCCGACGAAAAAGACAAGGCTATCTTGTTTAACGCTGCACAACAC 101842 || |||| | | || | |||| |||||| || ||| | || ||| Sbjct 77377 ATCGATACTTATATTCGAGATGCTCAAGAAAAGGCTCGTTTATTTGAAGCAATGGAACGT 77318 Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902 | || || |||| |||| ||||||||| | | ||||| ||| | | | | Sbjct 77317 ATTCCTTGTATTGAGAAAAAGGCTCAGTGGGCTTTAAGATGGATCCAATCCTCTGCCTCT 77258 Query 101903 TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTC 101962 || || || | | || || |||||||| || || ||||| || ||| |||| | || Sbjct 77257 TTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTTCTTTT 77198 Query 101963 GCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 ||||| || ||| | || || || || || |||| || | |||| ||| |||||| Sbjct 77197 TGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTAATGAG 77138 Query 102023 TTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063 | ||||| | || |||||| | ||| | ||||||||||| Sbjct 77137 CTTATTTCACGTGATGAAGGTTTGCATTGTGACTTTGCATG 77097 >seq62 Length=89227 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| ||||| ||||| || |||||| |||| | || ||||| || ||| Sbjct 48277 GTTGCCTTTGCAGCAGTAGAAGGGATATTCTTTTCTGGTTCTTTTTGTTCCATATTTTGG 48218 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| |||| | |||||||||| || | |||||||||||| || || | || Sbjct 48217 TTAAAGAAACGGGGCTTGATGCCTGGTCTTACTTTCTCCAATGAGTTGATATCACGAGAT 48158 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGC 102064 ||||| | ||| | || ||||| ||| Sbjct 48157 GAAGGCTTGCATTGTGAATTTGCTTGC 48131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578509973515