Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq62 237 2e-57 seq19 215 6e-51 seq26 206 3e-48 >seq62 Length=89227 Score = 237 bits (262), Expect = 2e-57 Identities = 367/521 (70%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || || || |||| || || |||| || || || || || || || || Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | ||| || || || | ||||||||||||| || || || |||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CAT-GT 33758 || ||||||||||| |||||||||| | | ||| || ||| | ||| ||| || Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTG---CTGGAACATCGT 48308 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| ||| || |||||| || |||||||| ||||||| | |||| ||||| | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | | ||||| ||||| || |||||||||||| | | | |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 |||||||| | ||||| || ||||||||||| || |||||||| | || |||| | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| |||| ||| || |||| || ||||||||||| || |||||| |||||| Sbjct 48489 TGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCA 48548 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 ||||| ||||| ||||| |||||| | || || || || ||||||||| Sbjct 48549 AAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAGAATTCCAATCT 48608 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 | ||||| |||| || |||||||| |||||||| || Sbjct 48609 CGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAA 48649 >seq19 Length=190679 Score = 215 bits (238), Expect = 6e-51 Identities = 485/718 (68%), Gaps = 12/718 (2%) Strand=Plus/Minus Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||| | | |||| || | || |||||| || |||| | ||| ||||| ||||| Sbjct 26348 ATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGCTTCATTGGGACA 26289 Query 63239 CATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCA 63295 | || ||| | || |||||||| |||| ||||||||| | ||| |||| ||| Sbjct 26288 AAATAAACTCCATT-TC--TCATCCTTTTCTACTCTTTTCATAAATAAATCGGGAACCCA 26232 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 | | | ||| | ||||| || || || ||| || ||||| ||||||| | | ||| Sbjct 26231 TAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCTCAAATC 26172 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 | || | | |||||| | |||||| || ||||| || || || | | |||| | Sbjct 26171 TAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCT 26112 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 ||| |||||| ||||| | ||||| || || | |||| | |||| | ||| |||| Sbjct 26111 TTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCATAGGAAC 26052 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535 ||| || || || | ||||||||||| ||||| | | ||||| |||| | Sbjct 26051 AATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTATATCATG 25992 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 || || | || || || || || ||||||| || | ||| |||| |||||| || || Sbjct 25991 AACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTTAAAGTATC 25932 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGT 63654 ||| || ||||| ||| || || |||| ||||| ||| ||||| || | || Sbjct 25931 ATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGAAACAAGAGGATAACTGAG 25873 Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714 | | | ||| |||||||| ||||| ||||| ||||| || ||||| ||||| ||| | Sbjct 25872 GTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATTTTCGAGACA 25813 Query 63715 GTAGATTGTACGTCT-CAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 63772 || || |||| ||||| ||| || | || | ||| ||||| || || || || Sbjct 25812 TATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-TGAATACCAACAGCTAC 25755 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 | ||| ||||| || || |||| ||| | | |||| | | || || ||||| Sbjct 25754 TCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACACGTAATAAATAGGA 25695 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 ||| |||||||| || ||||| || | || ||||||||||| || ||||||||| Sbjct 25694 ACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCATAAATAATA 25637 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 ||||||| ||| |||| || | || |||||||| || ||||| || | |||||||| Sbjct 26619 TACACACT--TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTAC 26562 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 | |||||||| || ||||||||||| || || | || || ||| || ||||| | Sbjct 26561 ATCGAATAGTTCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCA 26502 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 | ||||| | |||||||| || || | ||||| ||| || Sbjct 26501 TATATGGATTTCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 >seq26 Length=183063 Score = 206 bits (228), Expect = 3e-48 Identities = 363/529 (69%), Gaps = 0/529 (0%) Strand=Plus/Plus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 |||||||| || || || |||| ||| || || | ||| | || ||||| || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 | ||| ||||| || || | |||||| | ||||||||||||| || || || ||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 || ||||| ||||| |||||||| || | | | ||| || || ||| | || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG 77273 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || |||||| | ||||| || | | |||||| || ||| || || | | Sbjct 77274 ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCA 77333 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | | ||||| | | |||| || |||||||||||| | |||| ||| || Sbjct 77334 AATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTT 77393 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||||||||| ||||| || || || |||||||| || ||||||| || || | |||| Sbjct 77394 TCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATC 77453 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || |||||||| |||||| | || || || ||||| || | |||| Sbjct 77454 TGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCA 77513 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || |||||||| || || |||| || |||| | | ||| |||||||| Sbjct 77514 AAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCT 77573 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | | || | |||| ||| | |||||| | |||||||| || |||| Sbjct 77574 TCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| ||||| ||||| || || || ||||| || || ||||||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAt-ttttttAAATCCCAATTCAGAAAT 33409 ||||| ||||||||||||| | | || |||| ||| | | ||||||| || | Sbjct 76817 TCCATCCAATCAAACGGATT-TCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| | ||| || || || || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33519 | || || | | | || || ||| |||| |||| ||||| |||| Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCAT 76985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814191112240