Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq19 271 7e-68 seq26 244 1e-59 seq62 230 2e-55 >seq19 Length=190679 Score = 271 bits (300), Expect = 7e-68 Identities = 482/702 (69%), Gaps = 1/702 (0%) Strand=Plus/Minus Query 37933 AATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGACACAT 37991 || ||||| |||| ||| ||| ||| || || |||||| ||| ||||| | Sbjct 26345 AAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGCTTCATTGGGACAAAA 26286 Query 37992 TAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGC 38051 || | ||||| ||||| |||||||| | || |||||||||||| || |||||||| | Sbjct 26285 TAAACTCCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAATCGGGAACCCATAAACC 26226 Query 38052 AGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAA 38111 | ||| |||||| | || || |||||| || || ||||||||| || || ||| Sbjct 26225 ATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCTCAAATCTAAAAA 26166 Query 38112 ATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATC 38171 || || ||||| || ||||| || || | |||||| | | |||||| |||||| | Sbjct 26165 TTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTTTTTCC 26106 Query 38172 ACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACC 38231 ||||| |||| | |||||| | || | |||| ||| || | |||||| || || || Sbjct 26105 TCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCATAGGAACAATGCC 26046 Query 38232 ATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGA 38291 |||||| | || || |||| ||||||| | || ||||||| | | | Sbjct 26045 ATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTATATCATGAACTGC 25986 Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 |||||| || ||||| ||| ||| || || | || ||| |||||| |||||| | || Sbjct 25985 CAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTTAAAGTATCATAAAT 25926 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 ||||| || ||| || | || | || || |||||| || | ||||| ||| Sbjct 25925 TCCTTCAATGGAGTCTTCAGTCATAGTTAATAGGAAACAAGAGGATAACTGAGGTCTTGG 25866 Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| || || || ||||| ||||| || ||||| | || ||||| |||| ||||| Sbjct 25865 AGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATTTTCGAGACATATAATC 25806 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 ||| || || | ||| | || | ||| | ||||||||| | || ||| ||||| | Sbjct 25805 ATAAGTCTCCAATACTGCTTCCAAGTCATCCTTGTGAATACCAACAGCTACTCTCATCAA 25746 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 |||||||||||||| |||||| | ||| || | | || ||| || |||||| Sbjct 25745 CATATGTTGTGGTCGTTCTATCACTTTGCCATCCACACGTAATAAATAGGAACGTTCTAA 25686 Query 38592 TGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||| | |||||| ||| ||| ||| | |||| ||| || Sbjct 25685 AGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCATA 25644 >seq26 Length=183063 Score = 244 bits (270), Expect = 1e-59 Identities = 370/524 (71%), Gaps = 2/524 (0%) Strand=Plus/Plus Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 |||||| ||||| |||||||| |||||||| || | || || |||||||| || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 ||||| ||||| | ||||| ||||| | ||||||||| | | ||| ||||||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAG 11804 ||||||||||| ||||| |||||||| |||| | || || | | | | | | Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTG 77272 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 |||||| || ||||| | ||| || || | | || || ||| || || | Sbjct 77273 G-ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTT 77331 Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 ||||||| | |||||| | ||||| | ||| ||||| || | | | ||| Sbjct 77332 CAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAG 77391 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| | Sbjct 77392 TTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAA 77451 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| ||||| | |||||||||| || | ||||| ||||| || || ||||| Sbjct 77452 TCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATG 77511 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||| || || | || || || || | || ||| | | ||||| | ||||| Sbjct 77512 CAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAAT 77571 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 | || || || | |||||||||| ||||||| | ||||||||| Sbjct 77572 CTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAA 77615 >seq62 Length=89227 Score = 230 bits (254), Expect = 2e-55 Identities = 388/558 (70%), Gaps = 14/558 (3%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| |||||||| || ||||| |||| ||| | ||||| || || || | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || |||||||| || ||||| |||| ||||||||| | | ||| ||||||||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA---T 11806 || || || || |||||||| || |||| | || || | || || || | | | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCA-AAAC--TGCTGGAACATCGT 48308 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||||||| | |||||| ||||||||||| || || | |||| || |||| Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || ||| | |||||| |||||| | ||| ||||| || | |||| |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| | |||||||||||| || ||||| ||||||||||| || || || | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 || || || | ||| | | || || || ||||| || || |||||| || |||| Sbjct 48489 TGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCA 48548 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCCA 12102 |||||||| | | ||| |||||||| || || | | || |||| ||| Sbjct 48549 AAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAGAATT----CCA 48604 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 ||| |||||||| |||| || ||||||||||| ||||| ||||| || | | | Sbjct 48605 ATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACG 48664 Query 12163 TTTATACATTTTCCAGAT 12180 |||||| | || ||| || Sbjct 48665 TTTATATAATTCCCATAT 48682 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||| | |||| || ||| |||||||| || || |||| || ||||| ||| Sbjct 47786 TTTGATATTCTCCTACTCTTCTTTCAAAAAAATTGGTTTTGCCTTGTAACGATATCAACT 47845 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTC-ACAACCTA-ACTCTGTTAA 11457 |||| | ||| ||||| |||| |||| | | | |||||| | |||| || Sbjct 47846 CCATCCAATCAAATGGATTGGATAC-TTGATAATAGGAACGATAACCTAGAGCCTGT-AA 47903 Query 11458 TAATCTATCTGCGACGA-ATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 ||| | ||| || || | ||||||||||||| |||||||||| |||||| ||||| | Sbjct 47904 TAACCGATCAGC-ACAATATTCTATATACTGTGACATTAAACCCGCATTCATTCCTATCA 47962 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 | | || || | |||| || | ||| |||||||| || |||||||| Sbjct 47963 AAGCAACTGGTAAAGCATCTAAAATAAATTCCTTTTCATGATCCACCGCATC 48014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522264109520