Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq62 219 6e-52 seq19 212 8e-50 seq26 192 8e-44 >seq62 Length=89227 Score = 219 bits (242), Expect = 6e-52 Identities = 379/548 (69%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || || || ||||| || || || || ||||| | ||| || || || | |||||||||| Sbjct 48168 ATCAACTCATTGGAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATG 48227 Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 36313 || ||| || ||||||||||| || ||||||||||| |||||||||| | | ||| Sbjct 48228 GAACAAAAAGAACCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCA 48287 Query 36314 CCATAACCGGCACTGT--CAT-GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 36370 || ||| | ||| ||| ||||||| ||| || |||||| || |||||||| ||| Sbjct 48288 GCAAAACTG---CTGGAACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACA 48344 Query 36371 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 36430 |||| | | || || || | || | | ||||| ||||| || ||| Sbjct 48345 CAAGTAAGATTTTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAA 48404 Query 36431 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 36490 ||||| || | | | |||||||||||||| | ||||| || ||||| ||||| || Sbjct 48405 GTATCGATAAGTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCA 48464 Query 36491 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 36550 |||||||| | || |||| | || ||||| |||| ||| || |||| || |||||| Sbjct 48465 TAGAAACAACGCGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCA 48524 Query 36551 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 36610 ||||| || || ||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 48525 TTCACGATGCCATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCT 48584 Query 36611 TTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 36670 || || ||||||||| | ||||| |||| || |||||||| |||||| Sbjct 48585 GATGAATGGAGAGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTC 48644 Query 36671 CAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAA 36730 || || || || || |||||| | | ||| || | |||| || ||||| Sbjct 48645 CAGAAACTAGCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAAT 48704 Query 36731 ATAACAAA 36738 | |||||| Sbjct 48705 AAAACAAA 48712 >seq19 Length=190679 Score = 212 bits (234), Expect = 8e-50 Identities = 487/721 (68%), Gaps = 18/721 (2%) Strand=Plus/Minus Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 ||| | | |||| || | || |||||| || |||| || ||| ||||| ||||| Sbjct 26348 ATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGCTTCATTGGGACA 26289 Query 66032 CATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCA 66088 | || ||| | || |||||||| |||| ||||||||| | ||| |||| ||| Sbjct 26288 AAATAAACTCCATT-TC--TCATCCTTTTCTACTCTTTTCATAAATAAATCGGGAACCCA 26232 Query 66089 AAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 66148 | | | ||| ||||||| | || || ||| || ||||| ||||||| | | ||| Sbjct 26231 TAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCTCAAATC 26172 Query 66149 GAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 | || | | |||||| |||||| || ||||| || || || | | |||| | Sbjct 26171 TAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCT 26112 Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 ||| |||||| ||||| | ||||| || || | |||| | |||| | ||| |||| Sbjct 26111 TTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCATAGGAAC 26052 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||| ||||| || || |||||||| || ||||| | ||||||| |||| | Sbjct 26051 AATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTATATCATG 25992 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 || || | || || || || || ||||||| || | ||| |||| |||||| ||||| Sbjct 25991 AACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTTAAAGTATC 25932 Query 66389 ATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGT 66447 ||| || || || || || || |||| ||||| ||| ||||| ||| | | Sbjct 25931 ATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGAAACA---AGAGGATAACT 25876 Query 66448 GACGACT---AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 66504 || | || ||| |||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 25875 GAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATTTTCGAG 25816 Query 66505 AAAGTAGATTGTACGTCTC-AATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 66562 | | || || ||||| |||| ||| || | || | ||| ||||| || || || Sbjct 25815 ACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-TGAATACCAACAGC 25758 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 || | ||| ||||| || || |||| ||| | | ||| | | || || || Sbjct 25757 TACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACACGTAATAAATA 25698 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| ||| |||||||| || ||||| || | || ||||||||||| || |||||||| Sbjct 25697 GGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCATAAATAAT 25638 Query 66683 A 66683 | Sbjct 25637 A 25637 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821 ||| |||| || | || |||||||| || ||||| || | ||||||||| || || Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881 ||| || ||||||||||| || || | || || ||| || ||||| || ||||| | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGC 65911 |||||||| || || | ||||| ||| || Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 >seq26 Length=183063 Score = 192 bits (212), Expect = 8e-44 Identities = 360/529 (68%), Gaps = 0/529 (0%) Strand=Plus/Plus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 |||||||| || || || || | ||| || || | ||| | || || || || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 | ||| ||||| || || | |||||| | |||||||||||| ||| || |||||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT 36334 || ||||| ||||| || ||||| || | | | ||| || || |||| | || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG 77273 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || |||||| | ||||| || | | |||||| || || || || | | Sbjct 77274 ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCA 77333 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 || | | ||||| | | |||| || ||| ||||| || | |||| ||| || Sbjct 77334 AATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTT 77393 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 ||||||||||| ||||| || || ||||||||||| || ||||||| || || | |||| Sbjct 77394 TCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATC 77453 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || || || |||||||| |||||| | || || || |||||||| | |||| Sbjct 77454 TGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCA 77513 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCA 36634 || || |||||||| || || |||| || | || | | ||| |||||||| Sbjct 77514 AAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCT 77573 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | | || | |||| ||| | |||||| | |||||||| || |||| Sbjct 77574 TCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 86.0 bits (94), Expect = 8e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||| ||||| ||||| || || || ||||| || || || ||||| || || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAA-ATCCCAATTCAGAAAT 35985 ||||| |||| || ||||| | | | |||| ||| | | ||||||| || | Sbjct 76817 TCCATCCAATCAAACGGATTTCGAG-ACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||| | ||| || ||||| || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 36096 | || || | | | || || ||| |||| |||| ||| || || || Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATC 76986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169237639720