Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9 109 5e-19 seq54 104 2e-17 seq6 100 3e-16 >seq9 Length=249065 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || ||||||| ||||||||||||||||| || || || || || | Sbjct 144169 AAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGG 144110 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| | ||||||||||||| | |||| |||||| || || || || |||||||| Sbjct 144109 CCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCC 144050 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | || | | ||| | || || | ||| || || |||| || Sbjct 144049 TTGTC-TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGT 143991 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || | || || || ||||||||||| Sbjct 143990 AATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 143952 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || ||||||| ||||||||||||||||| ||||| || || || | Sbjct 144397 AAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGA 144338 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| | ||||||||||||| | |||| |||||| || || || || || ||||| Sbjct 144337 CCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCC 144278 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | || | | ||| | || || | ||| || || |||| || Sbjct 144277 TTGTC-TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGT 144219 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || | || || || ||||||||||| Sbjct 144218 AATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || ||||||| ||||||||||||||||| ||||| || || || | Sbjct 144625 AAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGA 144566 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| | ||||||||||||| | |||| |||||| || || || || || ||||| Sbjct 144565 CCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCC 144506 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | || | | ||| | || || | ||| || || |||| || Sbjct 144505 TTGTC-TTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGT 144447 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || | || || || ||||| ||||| Sbjct 144446 AATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 >seq54 Length=107229 Score = 104 bits (114), Expect = 2e-17 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | |||||| || ||||||| || |||||||| ||||| ||||| || | Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTC--TG 11074 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| |||||| || |||||||||||| |||| | |||||| || || |||| Sbjct 11075 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11134 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTC 139713 | || |||||||| || || | |||| || | |||| || | || || | || || Sbjct 11135 GAATTCCTTCTTTATC-TTGTATCTTTGACTT-GACGTTCTCAATAGTATCAGAAGGTTC 11192 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || | ||||| || || | ||||| || || |||||||| Sbjct 11193 TACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 102 bits (112), Expect = 8e-17 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||| || ||||||| || |||||||| ||||| ||||| || | || | | | Sbjct 11254 AAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTC--TGATAGAGTAC 11311 Query 139607 GA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 139664 || |||||| || |||||||||||| |||| | |||||| || || ||||| || |||| Sbjct 11312 GACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTT 11371 Query 139665 CTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAAC 139722 |||| || || | |||| || | |||| || | || || | || || || |||| Sbjct 11372 CTTTATC-TTGTATCTTTGACTT-GACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAG 11429 Query 139723 GGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||||| || || | ||||| || || |||||||| Sbjct 11430 AGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||| || ||||||| || ||||| || ||||| ||||| || || | | | Sbjct 11710 AAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCG--ATAGAGTAC 11767 Query 139607 GA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 139664 || |||||| || |||||||||||| |||| | |||||| || |||||||| || |||| Sbjct 11768 GACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTT 11827 Query 139665 CTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAAC 139722 |||| || || | |||| || | |||| || | || || | || || || |||| Sbjct 11828 CTTTATC-TTGTATCTTTGACTT-GACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAG 11885 Query 139723 GGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||||| || || | ||||| || || |||||||| Sbjct 11886 AGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||| || ||||||| || ||||| || ||||| ||||| || | || | | | Sbjct 11482 AAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTC--TGATAGAGTAC 11539 Query 139607 GA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 139664 || |||||| || |||||||||||| |||| | |||||| || || ||||| || |||| Sbjct 11540 GACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTT 11599 Query 139665 CTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGG 139724 |||| || || ||| || | | || | || || | || || || |||| | Sbjct 11600 CTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAG 11659 Query 139725 TCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| || || | ||||| || || |||||||| Sbjct 11660 TAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 >seq6 Length=291449 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||| || || | ||||||||||| || || |||||||| Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||| || || ||| | || || | || ||||| ||||| Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||| | | ||| | ||| || | || || || Sbjct 274425 ATACCTTCTTTATCT-TGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAAC 274367 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||||||||| || |||||||||||| Sbjct 274366 TTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCATA 274318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061315053600