Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq62 251 1e-61 seq19 226 4e-54 seq26 210 3e-49 >seq62 Length=89227 Score = 251 bits (278), Expect = 1e-61 Identities = 347/480 (72%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 || ||||| || || || || ||||| | ||| || || || | |||||||||||| | Sbjct 48174 TCATTGGAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAA 48233 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || || ||||||||||| || ||||||||||| ||||||||||| | | ||| || || Sbjct 48234 AAAGAACCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAA 48293 Query 50122 CTGGCGCTGT--CAT-GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 50178 ||| ||| ||| ||||||| ||| || |||||| || |||||||| ||||||| Sbjct 48294 CTG---CTGGAACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTA 48350 Query 50179 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 50238 | |||| ||||| | || | | ||||| ||||| || |||||||||| Sbjct 48351 AGATTTTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCG 48410 Query 50239 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 || | | | |||||||||||||| | ||||| || ||||||||||| || |||||| Sbjct 48411 ATAAGTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAA 48470 Query 50299 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACT 50358 || | || |||| | || ||||| |||| ||| || | || || ||||||||||| Sbjct 48471 CAACGCGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACG 48530 Query 50359 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC-GTTGGG 50417 || || ||| ||||||||||| ||||| ||||| |||||| |||| || | || Sbjct 48531 ATGCCATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAA 48590 Query 50418 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 || || ||||||||| | ||||| |||| || |||||||| |||||||| || Sbjct 48591 TG-GAGAGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAA 48649 >seq19 Length=190679 Score = 226 bits (250), Expect = 4e-54 Identities = 498/734 (68%), Gaps = 18/734 (2%) Strand=Plus/Minus Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 |||| || | | ||| | | |||| || | || |||||| ||| | || || ||| Sbjct 26361 TTTCATACTTTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAG 26302 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT---ACTCGTTTCATAAAGA 79954 ||| | ||||| | || ||| | || ||||||||| |||| ||||||||| | Sbjct 26301 CTTCATTGGGACAAAATAAACTCCATT-TC--TCATCCTTTTCTACTCTTTTCATAAATA 26245 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 ||| |||| ||| | | | ||| | ||||| | || || || || ||||| || Sbjct 26244 AATCGGGAACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGAT 26185 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 ||||| | | ||| | || | | |||||| | |||||| || ||||| || || || | Sbjct 26184 TCTTTCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAA 26125 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | |||| || ||| |||||| ||||| | ||||| || || | |||| | |||| Sbjct 26124 AAGCTCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTC 26065 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 | ||| |||| ||| ||||| || || |||||||| || ||||| | | | Sbjct 26064 GAAGCATAGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTG 26005 Query 80195 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 |||| |||| | || || | || || || || || ||||||| || | ||| |||| Sbjct 26004 CACGTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATC 25945 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAG 80313 |||||| |||||||| || || || ||| || ||| |||| ||||| ||| ||||| Sbjct 25944 TTTTTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGAAACA- 25887 Query 80314 CTAGACATTTGGTGACGACT---AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 ||| | ||| | || ||| |||||||| ||||| ||||| ||||| || ||| Sbjct 25886 --AGAGGATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTA 25829 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTC-AATAGCTGATTCTATATCC-CATTGAT 80428 || ||||| ||||| || || ||||| |||| ||| ||| | || | ||| | Sbjct 25828 AAGTATTTTCGAGACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-T 25771 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 |||| || || || || | ||| ||||| || || |||| ||| | | ||| || | Sbjct 25770 GAATACCAACAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCA 25711 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 || || || || ||| |||||||| || ||||| || | || |||||||||| Sbjct 25710 CACGTAATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTC 25651 Query 80549 GTTCGTAAATAATA 80562 | || ||||||||| Sbjct 25650 GATCATAAATAATA 25637 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 79641 TACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 ||| |||| || | || |||||||| |||||||| || | |||||||| ||| || Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 ||| || ||||||||||| || || | || || ||| || ||||| || | ||| | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 79761 ACCAGTTTCAATCTGAGATTCTATAATCGC 79790 |||||||| || || | ||||| ||| || Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 >seq26 Length=183063 Score = 210 bits (232), Expect = 3e-49 Identities = 364/529 (69%), Gaps = 0/529 (0%) Strand=Plus/Plus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 |||||||| || || || |||| ||| || || | ||| || || || || || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076 | ||| ||||| || || | |||||| | |||||||||||| ||| || |||||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT 50136 || ||||| ||||| || ||||| || || | | ||| || || ||| | || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG 77273 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || |||||| | ||||| || | | |||||| || ||| || || | | Sbjct 77274 ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCA 77333 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || | | ||||| | | |||| || |||||||||||| | |||| ||| || Sbjct 77334 AATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTT 77393 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||||||||| ||||| || || || |||||||| || ||||||| || || | |||| Sbjct 77394 TCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATC 77453 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || |||||||| ||| || | || || || |||||||| | |||| Sbjct 77454 TGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCA 77513 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 || || |||||||| || || ||||| || | | | | ||| |||||||| Sbjct 77514 AAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCT 77573 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | | || | |||| ||||| |||||| | |||||||| || |||| Sbjct 77574 TCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 113 bits (124), Expect = 6e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| ||||| ||||| || || || ||||| || || ||||||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAt-ttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| | | | |||| ||| | | ||||||| || | Sbjct 76817 TCCATCCAATCAAACGGATT-TCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| | |||||| ||||| || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 49898 | || || | | | || || ||| |||| |||| ||||| ||||| Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATC 76986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264912370120