Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq62 251 7e-62 seq26 206 3e-48 >seq62 Length=89227 Score = 251 bits (278), Expect = 7e-62 Identities = 413/587 (70%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| | ||| ||||||| || | || || || || || | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || |||||||| || ||||| |||||||||||||| | | ||| || || ||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || || ||||| ||||| || | ||| || || |||| |||| | || | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAAC-TGCTGGAACAT-CG-T 48308 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||||||| || ||| || | ||| ||||| | | || | |||| || || | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || ||| ||| ||| || | ||| || ||||| |||||||| |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 || || |||| ||||||||||| |||||||||||||| || || | ||||| | | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 14232 TGTACTTCCG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || ||||| | | ||||| | | ||||| |||||||| || || |||||| |||||| Sbjct 48489 TGAACTTCAGTACTAAAA-CGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGC 48547 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT--TCATTGTTGAGTTTTTTCCAA 14348 |||||||||||| | | ||||||| ||||||| | | || ||| |||||| Sbjct 48548 AAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATG--GAGAGAATTCCAA 48605 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || |||||| | || || || ||||| ||||||||||| |||||||| | || | Sbjct 48606 TCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGT 48665 Query 14409 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||||| | | ||||||||| ||||| ||| ||||| | ||||| Sbjct 48666 TTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 >seq26 Length=183063 Score = 206 bits (228), Expect = 3e-48 Identities = 365/527 (69%), Gaps = 5/527 (1%) Strand=Plus/Plus Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 |||||| ||||| |||||||| | || ||||| | |||||| || || || || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 ||||||||||| | ||||| ||||| ||||||||||| | | ||| || || ||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||||||||||| || |||||||| || | ||| || || |||| || || | | Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGC--AGAGGAT 77270 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | |||||| || |||||| | || ||||| | |||| || || ||| || || Sbjct 77271 TG-GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 | ||||||| |||| |||| || | | ||| || ||||| ||||| | ||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 |||| || || || |||||||| ||||| ||||| |||||||| |||| ||||| | Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 14228 CCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 || || || ||| |||||||||| || | || || ||| || || || || Sbjct 77450 AATCTGGACATCACGA-CAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAG 77508 Query 14287 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14346 |||||| || ||||||| || ||| || | |||| || || | ||| |||| Sbjct 77509 ATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCC 77568 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 |||| || || | || | ||||| ||| ||| | ||||||||| Sbjct 77569 AATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAA 77615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | |||| || ||||| ||||| || || ||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 ||||| ||||||| |||||| ||| || ||| ||| | || | | | | Sbjct 76817 TCCATCCAATCAAACGGATTTCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAAC 76876 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 13756 || | ||| |||| |||||||||||| ||| ||| | ||||| |||||| ||||| Sbjct 76877 AAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTAT 76932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725403472200