Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq62 255 6e-63 seq26 230 2e-55 >seq62 Length=89227 Score = 255 bits (282), Expect = 6e-63 Identities = 413/587 (70%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| |||||||| | ||| ||||||| || | || || || || || | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || |||||||| || ||||| |||||||||||||| | | || || || ||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || || ||||| ||||| || | || || || |||| |||| | | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAAC-TGCTGGAACATCG--T 48308 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||||||| || ||| || | ||| ||||| | | || | ||||||| || | | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || ||| | ||| ||| || | ||| || ||||| |||||||| |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 || || |||| ||||| ||||| |||||||||||||| ||||| | ||||| | | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 14020 TGTACCTCCG-AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || || | | ||||| | |||||||||||||||| || || |||||| |||||| Sbjct 48489 TGAACTTCAGTACTAAAA-CGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGC 48547 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT--TCATTGTTGAGTTTTTTCCAA 14136 |||||||||||| | | ||||||| ||||||| | | || ||| |||||| Sbjct 48548 AAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATG--GAGAGAATTCCAA 48605 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || |||||| | || || || ||||| ||||||||||| |||||||| | || | Sbjct 48606 TCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGT 48665 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||||| | | ||||||||| ||||| ||| ||||| | ||||| Sbjct 48666 TTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 >seq26 Length=183063 Score = 230 bits (254), Expect = 2e-55 Identities = 370/527 (70%), Gaps = 5/527 (1%) Strand=Plus/Plus Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 |||||| ||||| |||||||| | || ||||| | |||||| || || || || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 ||||||||||| | ||||| ||||| ||||||||||| | | || || || ||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||||||||| || |||||||| || | || || || |||| || || | | Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGC--AGAGGAT 77270 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 || |||||| || |||||| | || ||||| | |||| || || ||| ||||| Sbjct 77271 TG-GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | |||||| | |||| |||| || | | ||| || ||||| ||||| | ||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 |||| || || || ||||| || ||||| ||||| ||||||||||||| ||||||| Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 14016 CCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 || || || ||| ||||||||||||| | ||| || |||||| || || || Sbjct 77450 AATCTGGACATCACGA-CAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAG 77508 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 |||||| || ||||||| || ||| || | |||| || || | ||| |||| Sbjct 77509 ATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCC 77568 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 |||| | || || | || | ||||| ||| ||| | ||||||||| Sbjct 77569 AATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAA 77615 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||||||||| | |||| || ||||||||||| || || ||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 ||||| |||| || |||||| ||| || ||| ||| | || | | | || Sbjct 76817 TCCATCCAATCAAACGGATTTCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAAC 76876 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 || | ||| |||| |||||||||||| ||| ||| | ||||| |||||| ||||| | | Sbjct 76877 AAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAAT 76936 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||| || | | | | | ||| |||||||| ||| || || ||| ||||| Sbjct 76937 GCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATCGACGATAAT 76995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586209638120