Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 seq54 87.8 1e-12 >seq6 Length=291449 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 || || |||||||| | ||| ||| || || | ||| ||||| || | || | | || Sbjct 274533 CTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCG 274474 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || ||||| || || ||||||||||| | || ||||||||| | || | ||||||||| Sbjct 274473 TCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTA 274414 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| ||| || | | | ||| || || || || || | ||||| Sbjct 274413 TCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATG 274354 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||| || | ||||||||||| |||||||| Sbjct 274353 GTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq54 Length=107229 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | |||||||| || | ||| ||| || || | ||| || || || Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGAT 11076 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | |||||| || ||||| || || || ||||| || | || Sbjct 11077 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11136 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||| | ||| || || || || || Sbjct 11137 ATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACT 11196 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || |||||||||||||| ||||||||| Sbjct 11197 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | ||| || || || | ||||| |||| || Sbjct 11718 CACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTC 11777 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | |||||| || ||||| || || || ||||| |||| || | |||||||| || Sbjct 11778 AAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTG 11837 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||| | ||| || || || || || || | || ||||| || Sbjct 11838 TATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTT 11897 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||| || |||||||||||||| ||||||||| Sbjct 11898 TCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | ||| || || || | ||||| |||| || Sbjct 11490 CACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTC 11549 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | |||||| || ||||| || || || ||||| || | || | |||||||| || Sbjct 11550 AAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTG 11609 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||| | ||| || || || || || || | || ||||| || Sbjct 11610 TATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTT 11669 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||| || |||||||||||||| ||||||||| Sbjct 11670 TCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367587441114