Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq62 219 6e-52 seq19 212 8e-50 seq26 98.7 1e-15 >seq62 Length=89227 Score = 219 bits (242), Expect = 6e-52 Identities = 384/554 (69%), Gaps = 15/554 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || || || |||| || ||||||| || || || ||||| || || || Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| | ||| || || || | ||||||||| || ||| || ||||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CAT-GT 42241 || ||||||||||| |||||||||| | | ||| || ||| | ||| ||| || Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTG---CTGGAACATCGT 48308 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||| || |||||| || |||||||| ||||||| | |||| ||||| | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || | | ||||| ||||| || ||| |||||||| | | | |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || ||||| | ||||| || ||||||||||| || |||||||| | || |||| || Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || ||||| |||| ||| || | || || ||||| ||||| || || ||| |||||| Sbjct 48489 TGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCA 48548 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTC----GTCCGGTGTTAATTTATTCCA 42537 ||||| ||||| ||||| |||||| | || || | || | | |||||| Sbjct 48549 AAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAGA----ATTCCA 48604 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 ||| | ||||| |||| || |||||||| || ||||| || ||||| || Sbjct 48605 ATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACG 48664 Query 42598 TTTATACATATTCC 42611 |||||| | ||||| Sbjct 48665 TTTATATA-ATTCC 48677 >seq19 Length=190679 Score = 212 bits (234), Expect = 8e-50 Identities = 491/731 (67%), Gaps = 12/731 (2%) Strand=Plus/Minus Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 |||| || | | ||| | | |||| || | || |||||| || | || || ||| Sbjct 26361 TTTCATACTTTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAG 26302 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 |||||| ||||| | || ||| | |||| | | ||||| ||||||||| | || Sbjct 26301 CTTCATTGGGACAAAATAAACTCCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAAT 26242 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100 | |||| ||| | | | ||| | ||||| | || || || || ||||| ||||| Sbjct 26241 CGGGAACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCT 26182 Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160 || | | ||| | || | | |||||| | |||||| || ||||| || || || | | Sbjct 26181 TTCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAG 26122 Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220 |||| | ||| |||||| ||||| | ||||| || || | |||| | |||| | Sbjct 26121 CTCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAA 26062 Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280 ||| |||| ||| ||||| || | |||||||| || ||||| | | |||| Sbjct 26061 GCATAGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCAC 26002 Query 72281 GAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 | |||| || || | || || || || || ||||||| || | ||| |||| || Sbjct 26001 GTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTT 25942 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTA 72399 |||| |||||||| || || || || || || |||| ||||| ||| ||||| | Sbjct 25941 TTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGAAACA---A 25886 Query 72400 GACATTTGGTGACGACT---AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || | ||| | || ||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 25885 GAGGATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAG 25826 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTC-AATAGCTGATTCTATATCC-CATTGATGTA 72514 ||||| ||||| || || ||||| |||| ||| ||| | || | ||| || | Sbjct 25825 TATTTTCGAGACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-TGAA 25768 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || || || || | ||| |||||||| || |||| ||| | | ||| || | Sbjct 25767 TACCAACAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACAC 25708 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 || || ||||| ||| |||||||| || ||||| || | || ||||||||||| | Sbjct 25707 GTAATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGAT 25648 Query 72635 CGTAAATAATA 72645 | ||||||||| Sbjct 25647 CATAAATAATA 25637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783 ||| |||| || | | |||||||| ||||||||| || | ||||||||| || || Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843 ||| || ||||||||||| || || | || || ||| || ||||| ||| | ||| | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGC 71873 |||||||| || || | ||||| ||| || Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 >seq26 Length=183063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| ||||| ||||| || || || ||||| || |||||||||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAt-ttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||||||||| | | | |||| ||| | | ||||||| || | Sbjct 76817 TCCATCCAATCAAACGGATT-TCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||| | ||| || | || || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 42003 | || || | | | || || ||| |||| |||| ||| || || || Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATC 76986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135567459080