Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq9 86.0 5e-12 >seq6 Length=291449 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||||| || |||| || || |||||||| || || ||||| ||||| | Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || ||| ||||||||||||| ||||| || Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||| || ||| || | ||| ||||| ||| || | Sbjct 274425 ATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACT 274366 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || | || |||||||| || || || ||||| ||||| |||||||| |||| Sbjct 274365 TCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCATACTAAA 274313 >seq9 Length=249065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | ||||||| ||| | |||||||| |||||||||||||| || | | Sbjct 144178 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGAC 144119 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||| ||||||||| ||| |||| | | || || || ||| Sbjct 144118 AAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144059 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| ||| || || || | | | |||||| || || | Sbjct 144058 ATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 143999 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||||| || || || || | ||| || ||||| ||||||||||| Sbjct 143998 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTT 143949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570612221602