Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq62 208 7e-49 seq26 192 5e-44 >seq62 Length=89227 Score = 208 bits (230), Expect = 7e-49 Identities = 408/590 (69%), Gaps = 21/590 (4%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| ||||| ||||| |||||||||| ||| | ||| || || || || ||| Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 13211 CCCGGCAT-AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || ||||| |||||| ||||| || | ||||||||| | | ||| ||||| ||||| || Sbjct 48192 CCAGGCATCAAGCCC-CGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAA 48250 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 ||| ||||| ||||||||||| || | || | ||| || | ||| | || Sbjct 48251 TATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAA---ACTGCTGGAACATCG 48307 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 |||||| ||| | ||| | ||||| | ||| || || | | |||||| || |||| Sbjct 48308 TATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTA 48367 Query 13390 AAATAAATAA---tttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 || ||| | |||| | || || ||| |||||||||||| || | ||| || Sbjct 48368 GAACAAACGACGCTTTTCTGCCATA---TCTCGAATATAAGTATCGATAAGTAAAGCGTA 48424 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 |||||| ||||| | ||||||||| || || || |||||||| ||||| | || || | Sbjct 48425 CATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGG 48484 Query 13507 TACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 ||| |||||||| | | ||||| | |||| |||||||| || || || || ||| || Sbjct 48485 TACTTGAACTTCAGTACTAAAA-CGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAG 48543 Query 13566 CAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttttttttC-GTTTTCT-GACAACTTT 13621 | |||||||| || || ||| | | ||||| | || || | | | || | || Sbjct 48544 CTGCAAAAAATGCCAAAACATGGGAT--ATAAAGTGTTGCTCTGATGAATGGAGAGAATT 48601 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 ||||||| | ||||||| |||| || || || ||||| ||||| ||| ||| | Sbjct 48602 --CCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCC 48659 Query 13682 GCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || ||||| | |||||| | | |||| |||||||| | ||| Sbjct 48660 GCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAAC 48709 >seq26 Length=183063 Score = 192 bits (212), Expect = 5e-44 Identities = 362/529 (68%), Gaps = 5/529 (1%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||||||||| ||||| ||||| |||||||| | || ||||| || || || || | Sbjct 77096 ACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTCAA 77155 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || |||||||| |||| ||||| | ||||||||| | | ||| ||||| |||||||| Sbjct 77156 TCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAAAA 77215 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 |||||| || || || ||||| || | || | ||| || | | | | Sbjct 77216 TATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGAT---TG 77272 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| || ||||| | || |||| | || || ||| ||| ||||| | Sbjct 77273 GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTC 77332 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG-CTATACA 13448 ||||||| | ||||| | | ||| |||||||||||| || || ||| ||| Sbjct 77333 AAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGAT-AAGAAGAGAATAAG 77391 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| ||||||||||||||||| |||||||| || ||||||||||||| || |||| | Sbjct 77392 TTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAA 77451 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||| || || ||||||||||||| | ||| || ||| || ||||| || | Sbjct 77452 TCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATG 77511 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 |||| ||||| | || ||| ||| || | || | | | ||| || ||||| Sbjct 77512 CAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAAT 77571 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 || || || | |||||||||| || ||| | |||||||||||||| Sbjct 77572 CTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGC 77620 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||||||||| | |||| || ||||||||||| || |||||||| || ||||| | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| |||| || |||||| || | ||||| | | | || || | | ||| Sbjct 76817 TCCATCCAATCAAACGGATTTCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAAC 76876 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 || | || ||||||||||| || ||||| |||| | ||||| ||||||||||| ||| Sbjct 76877 AAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAAT 76936 Query 13040 TTTACAGG 13047 ||| || Sbjct 76937 GCTACCGG 76944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980125625066