Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq26 212 1e-49 seq6 199 9e-46 seq54 196 1e-44 seq62 176 1e-38 seq9 152 1e-31 seq63 145 2e-29 >seq26 Length=183063 Score = 212 bits (234), Expect = 1e-49 Identities = 374/537 (70%), Gaps = 10/537 (2%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 |||||||||||||||| |||||| ||||| | || |||||| ||||||||| || Sbjct 77620 GCTTCTTTTTGGACTGCTGAAGAAATAGATTTATCGAGTGACTTGGAAGATTGGAAGAAA 77561 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 || || |||| || | || || ||| | | | || || |||||| | || Sbjct 77560 TTGAATGCAGATGAGCGCCATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCGAC 77501 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 || || ||| || || || | ||| | || |||| || || |||||||| ||||| Sbjct 77500 GGAATTGTTTTGGAGAACCTTGCAGAAAGATTTTGTCGTGATGTCCAGATTCCAGAAGCA 77441 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 |||||||||| ||||| || ||||| || |||||||||||||| || | || ||| Sbjct 77440 CGATGTTTTTATGGATTTCAAATAGCAATGGAAAATATTCATTCGGAAACTTATTCTCTT 77381 Query 269000 TTAATAGATACTTATAT---AGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || ||||||||||| ||||| | ||| |||||| | ||||| | ||| Sbjct 77380 CTTATCGATACTTATATTCGAGATGCT--CAA-GAAAAGGCTCGTTTATTTGAAGCAATG 77324 Query 269057 AGAAC-TATGGACTGT-GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA 269114 |||| ||| ||| |||| ||||| || | |||||| | | |||||| | Sbjct 77323 -GAACGTATTCCTTGTATTGAG-AAAAAGGCTCAGTGGGCTTTAAGATGGATCCAATCCT 77266 Query 269115 GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGG 269174 || ||| | || | ||||| || ||||| |||||||| || ||||| ||||| | Sbjct 77265 CTGCCTCTTTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTG 77206 Query 269175 GGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCT 269234 | |||||| | || ||||||||||| || ||||| |||||||||||||| || |||| Sbjct 77205 GTTCTTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCT 77146 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTAT 269291 |||| || | || | || |||||||| || || ||||| || |||||| ||| Sbjct 77145 CTAATGAGCTTATTTCACGTGATGAAGGTTTGCATTGTGACTTTGCATGTTTACTAT 77089 >seq6 Length=291449 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| ||| | || | |||||| ||||| |||||||| |||||||| ||| Sbjct 274548 ATACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCA 274489 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| | || ||||| |||||||| || ||||||||||| ||| Sbjct 274488 GAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGA 274429 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| |||||||| | ||| |||||||| | ||||| |||||| Sbjct 274428 GGAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCA 274369 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || ||||| | ||||| |||||||| ||||| Sbjct 274368 ACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq54 Length=107229 Score = 196 bits (216), Expect = 1e-44 Identities = 162/198 (82%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||||||||||||||| |||||||| | ||||||||| |||||||| ||| Sbjct 11047 GTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11106 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| | ||||| |||||||| |||||||||||||| || ||||||| || Sbjct 11107 GCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11166 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||||||||| || || ||||||||||| || ||||| ||| Sbjct 11167 ACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11226 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 11227 TTCACAAAGATTTGCATT 11244 Score = 196 bits (216), Expect = 1e-44 Identities = 162/198 (82%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||||||||||||||| |||||||| | ||||||||| |||||||| ||| Sbjct 11275 GTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11334 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| | ||||| |||||||| |||||||||||||| || ||||||| || Sbjct 11335 GCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11394 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||||||||| || || ||||||||||| || ||||| ||| Sbjct 11395 ACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11454 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 11455 TTCACAAAGATTTGCATT 11472 Score = 196 bits (216), Expect = 1e-44 Identities = 162/198 (82%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||||||||| |||||||| | ||||||||| |||||||| ||| Sbjct 11503 GTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11562 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| | ||||| |||||||| |||||||||||||| || ||||||| || Sbjct 11563 GCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11622 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| ||||||||| || || ||||||||||| || ||||| ||| Sbjct 11623 ACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11682 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 11683 TTCACAAAGATTTGCATT 11700 Score = 187 bits (206), Expect = 6e-42 Identities = 160/198 (81%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||||||||| |||||||| | ||||||||| |||||||| ||| Sbjct 11731 GTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11790 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| | ||||| || ||||| |||||||||||||| || ||||||| || Sbjct 11791 GCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11850 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||||||||| || || ||||||||||| || ||||| ||| Sbjct 11851 ACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11910 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 11911 TTCACAAAGATTTGCATT 11928 >seq62 Length=89227 Score = 176 bits (194), Expect = 1e-38 Identities = 398/594 (67%), Gaps = 26/594 (4%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||| ||| || | | |||||| | || |||| || | ||| Sbjct 48712 TTTGTTTTATTTCCCATAAGATATAGGCAAATATGGGAATTATATAAACGTGCGGAAGCT 48653 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 ||| ||||| || |||||||| || || || | || ||| ||||||||| | | Sbjct 48652 AGTTTCTGGACAGTTGAAGAAGTCGACCTATCCCAAGATTTACGAGATTGGAATTCTCTC 48593 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 | || ||| | |||||||| || || | || |||||||||| | |||||| Sbjct 48592 CATTCATCAGAGCAACACTTTATATCCCATGTTTTGGCATTTTTTGCAGCTTCTGATGGC 48533 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 ||||| || ||||| | | || || || || || || | || ||||| | Sbjct 48532 ATCGTGAATGAAAACTTGGCAGCTCGTTTTAGTACTGAAGTTCAAGTACCCGAAGCGCGT 48473 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 ||||| || || || ||||| ||||| |||||| | ||||| || |||||| | || | Sbjct 48472 TGTTTCTATGGTTTTCAGATGGCTATGGAAAATGTACATTCGGAAATGTACGCTTTACTT 48413 Query 269003 ATAGATACTTATAT---AGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGA 269059 || ||||||||||| |||| || || |||||| | ||| ||||| | | Sbjct 48412 ATCGATACTTATATTCGAGAT-ATGGCA-------GAAAAGCGTCGTTTGTTCTACGCCA 48361 Query 269060 ACTATGGACT-----GTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT- 269113 | | || |||||| ||| ||| | || ||| || | ||||||||| |||| Sbjct 48360 TCGAAAATCTTACTTGTGTGAAAAAGAAAGCGGATTGGTCTTTAAAATGGATA--CGATG 48303 Query 269114 ----AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTT 269169 ||| | || | ||| | |||||||| ||||| || |||||||| |||||||| Sbjct 48302 TTCCAGCA-GTTTTGCTGAGC--GTTTAGTTGCCTTTGCAGCAGTAGAAGGGATATTCTT 48246 Query 269170 TTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAAC 269229 ||| || |||||| | || |||||||| |||||| | ||| | ||||| || | || Sbjct 48245 TTCTGGTTCTTTTTGTTCCATATTTTGGTTAAAGAAACGGGGCTTGATGCCTGGTCTTAC 48186 Query 269230 TTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||||| || || |||||| | || ||||| || || || || || ||||| Sbjct 48185 TTTCTCCAATGAGTTGATATCACGAGATGAAGGCTTGCATTGTGAATTTGCTTG 48132 >seq9 Length=249065 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| |||||||||||||| || | ||| | ||| ||||| | ||||| ||| Sbjct 144604 GTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGTTTACCA 144545 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||||| || || || || ||||| || || |||||||| | || Sbjct 144544 GCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGACTTG 144485 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| || || || ||||||||||| ||||| || || Sbjct 144484 ACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTC 144425 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 144424 TTCACAAATATCTGCAT 144408 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| |||||||||||||| || | ||| | ||| ||||| | ||||| ||| Sbjct 144376 GTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGTTTACCA 144317 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||||| || || || || ||||| || || |||||||| | || Sbjct 144316 GCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGACTTG 144257 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||| ||||| || || || ||||||||||| ||||| || || Sbjct 144256 ACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTC 144197 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||| ||||| Sbjct 144196 TTCACAAATATTTGCAT 144180 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| |||||||| ||||| || | ||| | || ||||| | ||||| ||| Sbjct 144148 GTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCCAACTGTTTACCA 144089 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||||| || || || || ||||| || || |||||||| | || Sbjct 144088 GCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTG 144029 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||| ||||| || || || ||||||||||| ||||| || || Sbjct 144028 ACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTC 143969 Query 104543 TTTACAAATATCTGCATTTT 104562 || |||||||| |||||||| Sbjct 143968 TTCACAAATATTTGCATTTT 143949 >seq63 Length=104598 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| |||||||| ||||| | |||||| || ||||||||||| Sbjct 60739 TGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCTAGTTGC 60680 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || | | |||||||| ||||| || ||||| || || || ||||| Sbjct 60679 TTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGTATCTTG 60620 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||||| ||||| | |||||| ||| || || || | ||||| ||||| |||||| Sbjct 60619 GACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTCCCAGTA 60560 Query 104537 AGTGT 104541 ||||| Sbjct 60559 AGTGT 60555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392012257564