Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq52 168 8e-37 >seq52 Length=109007 Score = 168 bits (186), Expect = 8e-37 Identities = 367/539 (68%), Gaps = 28/539 (5%) Strand=Plus/Plus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 ||||| ||| | ||||| |||| ||| | ||| ||| ||||| ||||||| |||| Sbjct 101662 AATTTCGAAAAGATGGGTATAGGAGGATTGGATAAAGAGTTTTCGGATATTTTCCGACGT 101721 Query 164458 GCATTTGCTTCTAGATCAGTTCCT--ATCGAAATAATaaaaaaaTTAGGCTGTAAACATA 164515 |||||||||||| | ||||| ||| | || || || || || | | ||| Sbjct 101722 GCATTTGCTTCTCGTGTCTTTCCTCCATCCG--TTATTAAGAAGTTGGGTATTCAGCATG 101779 Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575 | |||||||| || || |||| |||||||| || || || || || || || | Sbjct 101780 TGAAAGGAATGTTGCTATATGGTCCTCCTGGAACGGGAAAGACTTTGATTGCCCGGCAAA 101839 Query 164576 TTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632 ||| ||| | || ||| | || || ||| | || |||||||| ||| |||||| Sbjct 101840 TTGG-CAAAATGTTGAATGGAAAGGAACCC--AAAGTAGTAAATGGTCCAGAAATATTGA 101896 Query 164633 ACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAG 164692 |||||||||| || |||| |||| || || |||| | || |||| ||||||| | Sbjct 101897 ACAAATATGTGGGACAGTCGGAAGAAAACATTCGAAATCTTTTCAAGGAAGCTGAAGCTG 101956 Query 164693 AACAAAA-GAAAGCAGGTTTAGCT-AGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 || | ||||| | | || || || | ||| ||||| | ||||| || ||||| Sbjct 101957 AATATCGTGAAAGATTGGATGACTCAG--AACTGCATATTATTATATTTGACGAAATAGA 102014 Query 164751 TGCTCTTTGCAAAAAACGTGGTGAT-----------AATATTA-TTCATGATGCAGTGGT 164798 ||| | || || | ||||| || || | | |||||||| |||| || Sbjct 102015 TGCCATATGTAAGCATCGTGGGAATGTACGGGATGGAACAGGAGTTCATGATACAGTAGT 102074 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAAT-CCTTAAATAATATTTTAATTGTAG 164857 ||||||||||| |||||||||||||| || |||| | |||| ||||| | || | | Sbjct 102075 CAATCAGTTGCTATCTAAAATAGATGGAGT-GAATGCACTAAACAATATACTCGTTATTG 102133 Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAA 164916 | ||||| || ||| ||| | |||||||| || |||||| ||||||| | |||||| Sbjct 102134 GAATGACTAATCGAAAAGATATGATTGATGAGGCGTTATTAAGACCTGGAAGGTTAGAA 102192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595868774842800