Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq54 145 7e-30 seq9 138 1e-27 seq6 122 8e-23 seq63 86.0 6e-12 >seq54 Length=107229 Score = 145 bits (160), Expect = 7e-30 Identities = 178/241 (74%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| ||||| |||| ||||||||| | ||| || ||||| || | |||| Sbjct 11693 TTTGCATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTAT 11752 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || |||| || || || || || ||||| || |||||||||| | ||| || Sbjct 11753 AGTCCG--ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTG 11810 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || |||||||| |||||||| || | || |||| ||||||| | | ||| |||| Sbjct 11811 GTCGGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGA 11870 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | || || |||| || || || ||||| |||||||||||||||||||| ||||| || Sbjct 11871 AGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATTCT 11930 Query 95011 T 95011 | Sbjct 11931 T 11931 Score = 143 bits (158), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| ||||| |||| ||||||||| | ||| || || || || | |||| Sbjct 11237 TTTGCATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTAT 11296 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | |||| || || || || || ||||| || |||||||||| | ||| || Sbjct 11297 AGTC--TGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTG 11354 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || |||||||| |||||||| || | || |||| ||||||| | | ||| |||| Sbjct 11355 GTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGA 11414 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || || ||||| |||||||||||||||||||| ||||| Sbjct 11415 AGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 Score = 143 bits (158), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| ||||| |||| ||||||||| | ||| || ||||| || | |||| Sbjct 11465 TTTGCATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTAT 11524 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | |||| || || || || || ||||| || |||||||||| | ||| || Sbjct 11525 AGTC--TGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTG 11582 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || |||||||| |||||||| || | || |||| |||||| | | ||| |||| Sbjct 11583 GTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGA 11642 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || || ||||| |||||||||||||||||||| ||||| Sbjct 11643 AGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 Score = 141 bits (156), Expect = 8e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| |||||||||||||| | ||| || || || || | ||||| || | Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTC--TG 11074 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| || || || || || ||||| || |||||||||| | ||| || || |||| Sbjct 11075 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11134 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| |||||||| || | || |||| ||||||| | | ||| |||| | || | Sbjct 11135 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11194 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || || ||||| |||||||||||||||||||| ||||| Sbjct 11195 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 >seq9 Length=249065 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| | |||||| ||||| |||||||||||||| | ||||| || ||||| | ||||| Sbjct 144641 TTAGAGTCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATA 144582 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| |||| |||||| || |||| || || | ||| || || Sbjct 144581 GTCTGACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTC 144522 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| ||||||||||| ||||| | ||| || | |||||| | | ||| || | | | Sbjct 144521 TGGGGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGG 144462 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || |||| || || || || ||||| ||||| |||||||| |||||||||| Sbjct 144461 TTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCATGC 144406 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||| |||||||||||||| | ||||| || ||||| | ||||| || | Sbjct 144406 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144347 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||| |||||| || |||| || || | ||| || ||||| ||| Sbjct 144346 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144287 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| || | ||||||| | | ||| || | | | || || Sbjct 144286 ATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 144227 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || || || || ||||| ||||| |||||||| || ||||||| Sbjct 144226 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATGC 144178 Score = 127 bits (140), Expect = 2e-24 Identities = 173/240 (72%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| ||||| |||||||||||||| | ||||| || ||||| | Sbjct 144191 AAATATTTGCATGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAAT 144132 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || || || ||| | ||| |||| |||||| || |||| || || | ||| Sbjct 144131 ATTGTAGTCTGACAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTG 144072 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| ||||| ||||| ||||| | ||| || | ||||||| | | ||| || Sbjct 144071 TTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATC 144012 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || |||| || || || || ||||| ||||| |||||||| || ||||| Sbjct 144011 TGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 143952 >seq6 Length=291449 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| || | ||| ||||| || |||||||| || || || | |||||||| Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| ||| |||||| |||| || | ||| || |||||||||||| Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | ||| || | || || ||| || |||| | || || Sbjct 274425 ATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACT 274366 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || | || |||||||||||||| | ||||||||||| || ||||| || Sbjct 274365 TCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCATACT 274316 >seq63 Length=104598 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||||||| ||||| || || | |||||||| || ||| | ||| || Sbjct 60745 ACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCT 60686 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || |||| || || | ||| ||||| ||||| |||||||| ||||| | Sbjct 60685 AGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGT 60626 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| | | ||| || | | || || || | || ||||| || Sbjct 60625 ATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTC 60566 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || | | |||||| || || Sbjct 60565 CCAGTAAGTGTCTAGA-AAAGATGTGTAT 60538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288773623880