Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq31 134 2e-27 seq67 122 1e-23 >seq31 Length=162788 Score = 134 bits (148), Expect = 2e-27 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | |||||| |||||||| ||||| || || ||||| ||||| Sbjct 98764 GCCAAACGTCATCGTAAAGTTCTTCGTGATAACATTCAAGGTATTACAAAGCCTGCTATA 98705 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | |||||||| || |||||||| || |||||| | || || | | |||||||||| Sbjct 98704 AGACGTCTGGCACGACGTGGTGGTGTAAAGCGTATTTCGGGCCTCATTTATGAAGAGACG 98645 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | |||| |||| | ||| | | | || || | ||| || | ||||||||| Sbjct 98644 AGGAATGTGTTGAGAGTTTTCTTGGAAAGTGTCATTCGTGACGCAGTTACTTATACCGAG 98585 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | ||||| ||||| | |||||| | |||||||| ||||| || ||||| Sbjct 98584 CATGCCCGTAGAAAGACAGTCACTGCTATGGATGTTGTCTATGCCTTGAAGCGCCAAGGT 98525 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 98524 CGTACACTATACGGTTTTGGTGGTTAA 98498 >seq67 Length=57353 Score = 122 bits (134), Expect = 1e-23 Identities = 187/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | ||||| || ||||||||||| |||||||||||||| Sbjct 30333 GCAAAGCGTCATCGTAAAGTTTTGCGAGACAATATCCAAGGAATTACCAAGCCAGCTATA 30392 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | |||||||| ||| | | || || | |||| ||||| | Sbjct 30393 CGTCGTCTTGCCAGAAGAGGTGGAGTGAAGAGAATTTCGGGCCTCATCTACGAAGAAACG 30452 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | | ||| | | | |||||| | ||||| | |||||| ||| Sbjct 30453 CGCAACGTTCTTCGTGTTTTCTTAGAAAGCGTTATTCGCGATGCAGTTACCTATACTGAG 30512 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || || || || | |||||| |||| ||||| ||||||||||||| Sbjct 30513 CATGCACGTCGCAAAACAGTAACTGCAATGGATGTCGTATATGCTCTGAAACGTCAAGGT 30572 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || |||||| | ||| Sbjct 30573 CGGACACTTTACGGATTTGGAGGATAA 30599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074804105069