Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq36 504 9e-138 >seq36 Length=158315 Score = 504 bits (558), Expect = 9e-138 Identities = 739/1040 (71%), Gaps = 4/1040 (0%) Strand=Plus/Plus Query 137846 AATTAAACAGAGAGGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGT 137905 || || ||| ||||| |||||||| | | ||||| ||| | ||||| ||||| ||||| Sbjct 39758 AAATATACAAAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGT 39817 Query 137906 ATTTGTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTG 137965 ||| | || ||||| || | ||||||||||| | | ||| | || || |||| ||| Sbjct 39818 CTTTATTGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTG 39877 Query 137966 GCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCT 138025 | |||| || ||||| |||||||| ||||| || || || || || ||| |||| | Sbjct 39878 GTTTACAGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTT 39937 Query 138026 TGAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTC 138085 ||||| |||||| | || || || || || | |||||| || |||||| || || Sbjct 39938 AGAAGGATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTC 39997 Query 138086 TCTTCTTCTACTT-TGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTG 138144 || || | || ||||| || || ||||||| ||| | | |||| ||| ||| Sbjct 39998 A-TTATTATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTG 40056 Query 138145 GGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTT- 138203 | || || ||||||||| || | || || || ||| |||| || || || || Sbjct 40057 GAGGTCTTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTG 40115 Query 138204 CGCCAGTTTGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCT 138263 || || ||||| || | | | || || || | || ||||| ||||| || || || Sbjct 40116 CGTCAATTTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCA 40175 Query 138264 GGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGG 138323 || || || || || || || || || || || ||||| | || ||| | |||||| Sbjct 40176 GGACCAATTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGG 40235 Query 138324 TTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGT 138383 || |||||||| ||||| || ||||| ||||| ||||| | || || | || ||| Sbjct 40236 TTTTTTGCTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGT 40295 Query 138384 TTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGT 138443 |||||||| ||||| | || || |||||||||||||| || || || || || || || Sbjct 40296 TTCCATAATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGA 40355 Query 138444 GCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAA 138503 || | || |||||||||||||| || || ||||| ||||| || | |||||||||||| Sbjct 40356 GCATTACTTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAA 40415 Query 138504 CAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTT 138563 | |||||||| | || ||| ||| || ||| ||| ||||| |||||||||||| Sbjct 40416 GCTGCTAATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTT 40475 Query 138564 ACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTT 138623 || ||||| |||| ||||| ||||| ||||| |||| ||| ||| || | ||||| Sbjct 40476 ACGGCTAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTA 40535 Query 138624 CACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATT 138683 || || |||||||| ||||| || || | || | ||||| || ||||||||| || Sbjct 40536 CATTTTTTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATA 40595 Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 || ||||| | || |||| || |||||||| || || |||||| | ||||| ||||| Sbjct 40596 GGACTTGCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAG 40655 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 || || ||||| ||||| || || || || || | ||||| ||||||||| | | || Sbjct 40656 GACCCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCA 40715 Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCA 138863 |||||||| | |||||||| || ||||| ||||| || || || || || || ||| Sbjct 40716 TGGATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCA 40775 Query 138864 AGAGGCAACGCTCTGTGATA 138883 | || || || || | ||| Sbjct 40776 CGTGGAAATGCCCTTTAATA 40795 Score = 466 bits (516), Expect = 2e-126 Identities = 688/968 (71%), Gaps = 10/968 (1%) Strand=Plus/Minus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||||| || || ||| |||| ||||| || || || ||||| | ||||||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCAT 135483 ||| | ||||| ||||| | || ||||| | ||||| ||||| ||| || || Sbjct 27714 GGAGTATTAATGATCCCTACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTAT 27656 Query 135484 CGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTA 135543 ||||| || || || ||||| ||||| || | ||||| ||| | || || | | || Sbjct 27655 AGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATA 27596 Query 135544 CGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTT 135603 |||||||| || || |||||||| || | ||| | || || || || | || || Sbjct 27595 TGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTT 27536 Query 135604 CTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCA 135663 |||||| || |||||||| || ||| | ||||| |||||||||||||| ||||||||| | Sbjct 27535 CTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGA 27476 Query 135664 ACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACT 135723 | || | || || |||||| |||| || | | | || ||||| || || |||||| | Sbjct 27475 ATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATT 27416 Query 135724 CTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGC 135783 || || || || ||||| |||||||| || |||| |||||| |||||||| || Sbjct 27415 AAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGC 27356 Query 135784 TGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGT--TCTTTCAGTGATGGTATG 135841 || || ||||| || | |||| || ||||||||||| | |||||| |||||||| Sbjct 27355 AGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAG--ATGGTATG 27298 Query 135842 CCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATT 135901 || | || |||||||| |||||||| | ||| | |||||||| || ||||| || ||| Sbjct 27297 CCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATT 27238 Query 135902 CTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCT 135961 | |||||||| || || ||| |||| |||||||| || || || ||||| | || | Sbjct 27237 TTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGT 27178 Query 135962 GCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCC 136021 || ||||| || |||||||| || || ||| | ||||||| || || ||| || || Sbjct 27177 GCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCT 27118 Query 136022 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 136081 ||| ||||||| || || || |||||| | || ||||| ||||| |||||||||||| Sbjct 27117 GCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCAT 27058 Query 136082 GGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACAC 136141 ||||| || || | | || ||||||||||| || || || || || || |||| Sbjct 27057 GGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACAT 26998 Query 136142 TTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC--TA 136199 || ||| | ||| ||||| || || |||| ||| | | | | | ||||| | Sbjct 26997 TTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAG--GTATCAGCA 26940 Query 136200 CGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTC 136259 | ||||| || ||| | |||||||| || || || || || |||| |||| |||| Sbjct 26939 CAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAA 26880 Query 136260 GTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGC 136319 | ||| | || || ||||| ||| | | |||||||| | | || || || || |||| Sbjct 26879 GAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGC 26820 Query 136320 ACGAGCGT 136327 | || ||| Sbjct 26819 ATGAACGT 26812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627964601123200