Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq36 500 3e-137 >seq36 Length=158315 Score = 500 bits (554), Expect = 3e-137 Identities = 705/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| ||| | || || || || || || || || ||||||||||||||||| | Sbjct 27765 TTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTA 27706 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||||| | ||||| || |||||| | | ||||| || || || Sbjct 27705 ATGATCCCTACATTACTAACAGCTACATCTGTATTTATAATTGGATTTATAGCTGCTCCA 27646 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || |||||||| || || | || |||||||| || || || | || ||||| ||| Sbjct 27645 CCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAAT 27586 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| |||| || | || || | || |||||||||||| | || || ||||| || Sbjct 27585 ATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTCTATCCTATT 27526 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | |||||||||| ||| |||| || |||||||| ||| || | | || Sbjct 27525 TGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTT 27466 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 || |||||||| || ||| | ||||| || | | |||||| || || | Sbjct 27465 TTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGT 27406 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | |||||| | || |||||| |||||| | |||| || | | ||||| ||| Sbjct 27405 CTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCT 27346 Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 || ||| | | || || |||| ||||| |||||| ||||||||||| | ||||| Sbjct 27345 GTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATT 27286 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 |||||||||||||| |||||||| || |||||||| ||||| ||||| | ||||||||| Sbjct 27285 TCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCG 27226 Query 19830 TTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 19889 || || ||| | ||||||||||| ||||| || || || | || ||| |||||||| Sbjct 27225 TTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGC 27166 Query 19890 AGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATC-GCAGAACTATGG 19948 | | || ||||| | || |||||||| ||| ||| || ||| ||| |||| Sbjct 27165 TCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGCA-AACAATGG 27107 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 ||||| || || ||||| | || || ||||| || || ||||| || || || ||||| Sbjct 27106 TTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGG 27047 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||| || || |||||||| || |||||||| || || ||||||||||| | || Sbjct 27046 AAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGC 26987 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | | || || || | || ||||| || || | || ||| |||| ||||| || || Sbjct 26986 TTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAA 26927 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAA 20187 | | ||||| ||||| ||||| || || || ||||| | |||| |||| |||| | Sbjct 26926 CTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAA-GGAAGAGTAATTAATA 26868 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | |||||| | || || | ||| | ||||| ||||| || || |||| Sbjct 26867 CTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATG 26808 Query 20248 CTCATAACTTCCCACTTGATTTAGC 20272 | |||||||| || || |||||||| Sbjct 26807 CACATAACTTTCCTCTAGATTTAGC 26783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440857299348