Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq36 511 8e-140 >seq36 Length=158315 Score = 511 bits (566), Expect = 8e-140 Identities = 689/954 (72%), Gaps = 8/954 (1%) Strand=Plus/Minus Query 211604 TCTATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCT 211663 |||| | ||||||||||| || | |||||||| | ||| | || ||| | | Sbjct 27731 TCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTACATCTGTAT 27672 Query 211664 TTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAG 211723 |||| | | ||| || || || || || |||||||| ||||| || | |||||||| Sbjct 27671 TTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTT 27612 Query 211724 CTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACG 211783 | || ||||| | ||||| || || || || ||||||| |||| || | || || | Sbjct 27611 CAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATG 27552 Query 211784 CAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACA 211843 |||| || |||| ||||||||||| |||||||||||| || | ||||| ||||| || | Sbjct 27551 CAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATA 27492 Query 211844 ATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGG 211903 |||| |||||||| | || || | || |||||| |||| ||||| | ||||| |||| Sbjct 27491 ATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGG 27432 Query 211904 GAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATT 211963 || | | |||||| | || ||| | || |||||||||||||| || |||| | Sbjct 27431 GACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCT 27372 Query 211964 CAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCAT 212023 |||| ||||| | ||||| |||||||| || | || || | || || ||| | Sbjct 27371 CAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTT 27312 Query 212024 TCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAG 212083 | ||||| |||||||| |||||||| || || || || || || ||||| || ||||||| Sbjct 27311 TTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAG 27252 Query 212084 CAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTG 212143 | |||||||| || | ||||| || || |||||| |||||||| ||| | || || | Sbjct 27251 CTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAG 27192 Query 212144 GAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCA 212203 | ||||||| ||| |||||||| |||||||| || || | || |||||||| | Sbjct 27191 GTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAA 27132 Query 212204 CTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACA 212263 | | || || ||| ||||||| || || || |||||| | || || ||||||| Sbjct 27131 CAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACA 27072 Query 212264 TCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA-- 212321 |||||||||| ||||| || || || ||| | || ||||| |||||| || || || Sbjct 27071 TCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATT 27012 Query 212322 CA-GCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCT 212380 || || | ||||| |||||| | || | |||||| || | ||| | ||| | || | Sbjct 27011 CACGCTCA---TTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACAT 26955 Query 212381 CTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTG 212440 || | |||||| ||||||||||||| ||| |||||||||| || || || ||||| |||| Sbjct 26954 CTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTG 26895 Query 212441 TTGATGCATCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTT 212499 ||||| | ||| | ||| || || |||||||| |||| || | || | ||||| | Sbjct 26894 TTGATTC-TCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTA 26836 Query 212500 GGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCA 212553 || || ||||| ||||| ||| | |||||||| ||||| || || || |||||| Sbjct 26835 GGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGATTTAGCA 26782 Score = 118 bits (130), Expect = 2e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 207597 GAAGATCAATATATACTAGAAGCAGCCGAAGATGCTGGTCTAGATATGCCTTCTTCTTGT 207656 || |||||||||||| |||| ||||| ||||| || ||||| | || | ||||||| Sbjct 69671 GATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCTATTCTTGT 69730 Query 207657 AGAGCAGGAGCTTGTTCTGCTTGTTTAGGAAAAGTATTAGAAGGATCAGTTAATAATGAA 207716 ||||||||||| |||||| ||||| ||| ||| | ||||||||| ||| || | Sbjct 69731 AGAGCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGAAGGACAAGTAGATCAATCT 69790 Query 207717 GAACAATCATTCTTAGATGATGATCAATTAGAAGAAGGAT 207756 || || ||||| ||||||||||||| || ||| ||||| Sbjct 69791 GATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGAT 69830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807550829107480