Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq36 583 1e-161 >seq36 Length=158315 Score = 583 bits (646), Expect = 1e-161 Identities = 724/991 (73%), Gaps = 0/991 (0%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 ||| || ||||| ||||| | ||||||||||| || ||||||||||| | ||||| Sbjct 27745 CACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAAC 27686 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 ||| | || || || | | ||| || |||||||| ||||| ||||| ||||| || Sbjct 27685 AGCTACATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTAT 27626 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 |||||||||||| | || || || |||||||| || || || || |||||||| | || Sbjct 27625 TAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGT 27566 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 || | || || ||||||||| |||| |||||||| || ||||||||||| || | || Sbjct 27565 ACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGA 27506 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 170985 || ||| | || || || |||||||| | ||| | |||| |||||| |||||||||| Sbjct 27505 TGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAAT 27446 Query 170986 CTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGAT 171045 | ||| || ||||| | | |||||| || || | || |||||| | |||||||| Sbjct 27445 TTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGAT 27386 Query 171046 ATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATT 171105 | ||||| | |||||| ||||| ||||||| || ||||| || | ||||| | Sbjct 27385 AGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTAT 27326 Query 171106 CGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCAT 171165 || || ||| || || |||||||||||| ||||||| || ||||| || || || || Sbjct 27325 TGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTAT 27266 Query 171166 GTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 171225 ||| || |||||||| ||||| || || ||||||| || || |||||| ||||| || Sbjct 27265 GTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGC 27206 Query 171226 AGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCT 171285 ||| | || || ||| | || |||||||||||||| ||||| || || || | | Sbjct 27205 TGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTT 27146 Query 171286 AATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGA 171345 || | || ||||| ||||| ||| | |||| | || ||||| || || |||||| | Sbjct 27145 GATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATA 27086 Query 171346 AGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGC 171405 ||||| |||||||| |||||||||||||| || || || |||||||| ||||| ||||| Sbjct 27085 TGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGC 27026 Query 171406 ATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGT 171465 | || || || || || |||||||| |||||| | ||| ||| || ||||| ||| | Sbjct 27025 AAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTAT 26966 Query 171466 ATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAA 171525 ||| | || ||| | |||||| | ||||||||||| ||| | || ||||| || || || Sbjct 26965 TTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAA 26906 Query 171526 CCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAG 171585 ||||| ||||| ||| | | |||| | | || |||| ||| || | || | Sbjct 26905 TCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCG 26846 Query 171586 AGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCT 171645 ||||| | ||||| ||||| ||||||||| | |||||||| ||||| || ||||| | Sbjct 26845 TGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGATTT 26786 Query 171646 AGCATCTGCTGAGTCTACAACAGTTGCATTA 171676 |||| || | ||| | ||||||| ||| Sbjct 26785 AGCAAGTGAAGTATCTTTACCAGTTGCTTTA 26755 Score = 535 bits (592), Expect = 5e-147 Identities = 749/1050 (71%), Gaps = 23/1050 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 |||||| ||||| ||| | ||||||||||| |||| | ||||| || || || || | Sbjct 39766 AAAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTG 39825 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 ||||||| ||| | ||||||| || ||| | || ||||| | || | ||||| || Sbjct 39826 GATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAG 39885 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || ||||| || || || ||||| || |||||| | || || || ||| | || ||| Sbjct 39886 GTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGAT 39945 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || |||||||||| |||| || |||||| || |||| | Sbjct 39946 GTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTAT 40005 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | |||||||||| || || ||||| ||| || |||||| |||| | || || || | Sbjct 40006 TTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTT 40065 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTT-AGACAGTTT 172142 ||| ||| || |||||||| | |||| | |||||||| || || | || ||| Sbjct 40066 GGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAATTT 40124 Query 172143 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATT 172202 || || || || | || || || | || ||||| ||| |||| || |||| | ||| Sbjct 40125 GAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATT 40184 Query 172203 GCAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCA 172262 ||||| || | ||||| || |||||| | || || ||||||||| || || Sbjct 40185 GCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCT 40244 Query 172263 CCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAAT 172322 ||| ||||| || ||||| |||||||| | ||||||||| |||| |||||||| ||| Sbjct 40245 CCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAAT 40304 Query 172323 ATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTA 172382 ||| | ||||||||||||||||||||||| || || ||||| || ||||||||||| Sbjct 40305 TGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTT 40364 Query 172383 TGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACT 172442 ||||| || ||||| || || ||| |||| ||||| | |||| || | Sbjct 40365 TGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAG----ATGGC-------- 40412 Query 172443 GAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACT 172502 |||| | ||| |||||||| || || || ||||| ||| |||||| Sbjct 40413 GAAGCT---------GCTAATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACT 40463 Query 172503 TATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAAC 172562 ||| ||| |||| ||||| | || |||||||| || |||||| | |||||||| ||| Sbjct 40464 TATTCAATGGTTACGGCTAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAAC 40523 Query 172563 AAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCT 172622 ||||||| |||| || ||||| | || || || || | || | |||||| ||| Sbjct 40524 AAAAGATGGCTACATTTTTTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCT 40583 Query 172623 ATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATA 172682 || |||||| |||| |||||| | || | | ||||| || ||||| |||||||| || Sbjct 40584 ATTGGTATCATAGGACTTGCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTA 40643 Query 172683 AGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAA 172742 | || ||||| |||||||| ||||| || || || ||||| || | ||||| |||||| Sbjct 40644 CGTGCCGCAGAGGACCCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAA 40703 Query 172743 GGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAA 172802 ||||| |||||||||||| || | |||||||| ||||| || ||||| |||||||| Sbjct 40704 GGTATAAGAGCATGGATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAG 40763 Query 172803 GAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || || || ||||| || || || || ||| Sbjct 40764 GAGGTTTTACCACGTGGAAATGCCCTTTAA 40793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265713420120