Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq26 174 2e-38 seq62 158 1e-33 >seq26 Length=183063 Score = 174 bits (192), Expect = 2e-38 Identities = 354/530 (67%), Gaps = 15/530 (3%) Strand=Plus/Plus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||||||||| |||||||||||||||||||| | || | |||||||| || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 || || ||||| | |||||||||||| ||||||||||| || ||| | || ||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTA 21649 || || ||||| || ||||||||||| ||||| || ||| | | | ||| || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATT-- 77271 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 |||||| || ||||| | ||||||| | ||||||| ||| || || Sbjct 77272 ----GGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATT 77327 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 |||| || | | || ||||| | |||| || | | Sbjct 77328 GCTTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAA 77387 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 || |||| ||||| |||||||| || ||||| |||||||| |||||||||| ||| ||| Sbjct 77388 TAAGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCT 77447 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | || || || | |||||| || || | ||| || || ||||| || Sbjct 77448 GGAATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAA 77507 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG---TTAATTTT 21946 | ||||| || ||||||| | || |||| || || ||||| | ||||| Sbjct 77508 GATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTC---ATCTGCATTCAATTTC 77564 Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||||||| || || | |||||||||| |||||||| |||||||| Sbjct 77565 TTCCAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAA 77614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || | |||| || || ||||| || |||||||||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 21245 TCCATAAAATCAAATGGATTTTCAGA-TTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||| |||||| ||| | ||||| ||| | | | |||| | || Sbjct 76817 TCCATCCAATCAAACGGATTTCGAGACTGGAAATA-TTTCTCATATCCCAAAGCAACCAA 76875 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || | ||| || ||||| || ||||| |||| ||| | |||| |||||| || ||||| Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 21364 TTTTACAGG 21372 | ||| || Sbjct 76936 TGCTACCGG 76944 >seq62 Length=89227 Score = 158 bits (174), Expect = 1e-33 Identities = 388/587 (66%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| ||||||||||| |||||||| | ||| || ||||| || || || | | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| || || | || |||||||||||||| || ||| | || |||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 || || || || || ||||| |||||||| || ||| | | | | | ||| | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACT-GCTGGAACATCG--T 48308 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||||||| | ||| | || || | ||| | |||| || | || || || | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || | | || ||||| | | ||| || | |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 || ||||||| |||||| || || |||||||| || || ||||| | || || | | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||| || | | ||| || |||||||||||||| || || |||||| || ||| Sbjct 48489 TGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCA 48548 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTC-GTTATCTGTTAATTTTTTCCAATC 21954 ||||||||||| | || |||||| | | | || | | || | |||||||| Sbjct 48549 AAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATG-GAGAGAATTCCAATC 48607 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 | |||||||| |||| || ||||||||| |||||| || ||||| || ||| Sbjct 48608 TCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGTTT 48667 Query 22015 ATACATAAT--CCAGATATCATTATATATTATTGGAAATATTACAAA 22059 || ||||| ||| || | ||||| |||| ||||||| ||||| Sbjct 48668 AT--ATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897921086920