Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq62 239 6e-58 seq26 215 6e-51 seq19 203 4e-47 >seq62 Length=89227 Score = 239 bits (264), Expect = 6e-58 Identities = 342/479 (71%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 || ||||| || || || || ||||| | ||| || || || | ||||||||||||| Sbjct 48174 TCATTGGAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAA 48233 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || || ||||||||||| || ||||||||||| |||||||||| | | ||| || || Sbjct 48234 AAAGAACCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAA 48293 Query 33466 CCGGCGCTGT--CAT-GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 | | ||| ||| ||||||| ||| || |||||| || |||||||| ||||||| Sbjct 48294 CTG---CTGGAACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTA 48350 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 | |||| ||||| | || | | ||||| ||||| || |||||||||| Sbjct 48351 AGATTTTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCG 48410 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 || | | | |||||||||||||| | ||||| || ||||||||||| || |||||| Sbjct 48411 ATAAGTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAA 48470 Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACT 33702 || | || |||| | || ||||| |||| ||| || | ||||| ||||||||||| Sbjct 48471 CAACGCGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACG 48530 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || ||| ||||||||||| ||||| ||||| |||||| | || || || Sbjct 48531 ATGCCATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAA 48590 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 || ||||||||| | ||||| |||| || |||||||| |||||||| || Sbjct 48591 TGGAGAGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAA 48649 >seq26 Length=183063 Score = 215 bits (238), Expect = 6e-51 Identities = 365/529 (69%), Gaps = 0/529 (0%) Strand=Plus/Plus Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360 |||||||| || || || |||| ||| || || | ||| || || || || || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 | ||| ||||| || || | |||||| | ||||||||||||| || || |||||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33480 || ||||| ||||| |||||||| || | | | ||| || || ||| | || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG 77273 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || |||||| | ||||| || | | |||||| || ||| || || | | Sbjct 77274 ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCA 77333 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || | | ||||| | | |||| || |||||||||||| | |||| ||| || Sbjct 77334 AATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTT 77393 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||||||||| ||||| || || || |||||||| || ||||||| || || | |||| Sbjct 77394 TCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATC 77453 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || |||||||| ||| || | || || || |||||||| | |||| Sbjct 77454 TGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCA 77513 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33780 || || |||||||| || || |||| || |||| | | ||| |||||||| Sbjct 77514 AAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCT 77573 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 | | || | |||| ||||| |||||| | |||||||| || |||| Sbjct 77574 TCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| ||||| ||||| || || || ||||| || || ||||||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAt-ttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||||||||| | | | |||| ||| | | ||||||| || | Sbjct 76817 TCCATCCAATCAAACGGATT-TCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||| | |||||| || || || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 33242 | || || | | | || || ||| |||| |||| ||||| ||||| Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATC 76986 >seq19 Length=190679 Score = 203 bits (224), Expect = 4e-47 Identities = 485/721 (67%), Gaps = 18/721 (2%) Strand=Plus/Minus Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 ||| | | |||| || | || |||||| || |||| || ||| ||||| ||||| Sbjct 26348 ATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGCTTCATTGGGACA 26289 Query 63188 CATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCA 63244 | || ||| | || |||||||| |||| ||||||||| | ||| |||| ||| Sbjct 26288 AAATAAACTCCATT-TC--TCATCCTTTTCTACTCTTTTCATAAATAAATCGGGAACCCA 26232 Query 63245 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63304 | | | ||| | ||||| | || || ||| || ||||| ||||||| | | ||| Sbjct 26231 TAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCTCAAATC 26172 Query 63305 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 | || | | |||||| | |||||| || ||||| || || || | | |||| | Sbjct 26171 TAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCT 26112 Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 ||| |||||| ||||| | ||||| || || | |||| | |||| | ||| |||| Sbjct 26111 TTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCATAGGAAC 26052 Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484 ||| || || || | ||||||||||| ||||| | | ||||| |||| | Sbjct 26051 AATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTATATCATG 25992 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 || || | || || || || || ||||||| || | ||| |||| |||||| || || Sbjct 25991 AACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTTAAAGTATC 25932 Query 63545 ATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGT 63603 ||| || || || ||| || || |||| ||||| ||| ||||| ||| | | Sbjct 25931 ATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGAAACA---AGAGGATAACT 25876 Query 63604 GACGACT---AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63660 || | || ||| |||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 25875 GAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATTTTCGAG 25816 Query 63661 AAAGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63718 | | || || |||| ||||| ||| || | || | ||| ||||| || || || Sbjct 25815 ACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-TGAATACCAACAGC 25758 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 || | ||| ||||| || || |||| ||| | | ||| | | || || || Sbjct 25757 TACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACACGTAATAAATA 25698 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| ||| |||||||| || ||||| || | || ||||||||||| || |||||||| Sbjct 25697 GGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCATAAATAAT 25638 Query 63839 A 63839 | Sbjct 25637 A 25637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 ||| |||| || | || |||||||| || ||||| || | ||||||||| ||||| Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 ||| || ||||||||||| || || | || || ||| || ||||| || ||||| | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGC 63067 |||||||| || || | ||||| ||| || Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943828298280