Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq19 170 5e-37 seq26 98.7 3e-15 seq62 91.5 4e-13 >seq19 Length=190679 Score = 170 bits (188), Expect = 5e-37 Identities = 428/646 (66%), Gaps = 12/646 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG---TT 363504 ||||| || || |||||||| ||| | || ||| ||||||| || | ||||| | Sbjct 25728 GAACGACCACAACATATGTTGATGAGAGTAGCTGTTGGTATTCA---CAAGGATGACTTG 25784 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC---ACGCACGCCACG 363561 || || | | || || ||| | || || || |||| || | || || || | Sbjct 25785 GAAGCAGTATTGGAGACTTATGA--TTATATGT-CTCGAAAATACTTTACTCATGCTTCA 25841 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || || | | |||||| || |||| | || ||| | || ||||| || || ||| Sbjct 25842 CCTACTTTATTCAATGCGGGTACTCCAAGACCTCAGTTATCCTCTTGTTTCCTATTAACT 25901 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||| || || ||||| || || || | ||| || | || | ||||| ||||||| Sbjct 25902 ATGACTGAAGACTCCATTGAAGGAATTTATGATACTTTAAAAAGATGTGCAGTTATTTCT 25961 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || | ||| || || ||||| | | | || || | |||||| || ||| ||| Sbjct 25962 AAAAGTGCTGGTGGTATTGGATTGGCAGTTCATGATATACGTGCAACCAAATCTTATATT 26021 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || || ||| || ||||| | ||||| |||||||| || ||| | ||||| Sbjct 26022 CGAGGTACCAATGGAACTTCTAATGGCATTGTTCCTATGCTTCGAGTATTTAATGATACT 26081 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || || || || || || || |||||||| | ||||| || |||||||| ||| | ||| Sbjct 26082 GCAAGATATGTGGATCAAGGAGGAGGAAAAAGAAAAGGAGCTTTTGCTATTTATTTGGAG 26141 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 ||| ||||||||||||||||| ||| | || | | || || ||||| || ||| Sbjct 26142 CCTTGGCATGCCGATATTTTTGAATTTTTAGATTTGAGAAAGAATCATGGAAAGGAAGAA 26201 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 || ||||| ||| |||| |||| | |||||| | || |||||||| | || Sbjct 26202 AATCGAGCACGAGATTTGTTTTATGGTTTATGGGTTCCCGATTTATTTATGAAAAGAGTA 26261 Query 363982 GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 || | | |||| ||| | ||||| || | ||| ||||||| | | ||| Sbjct 26262 GAAAAGGATGAGAAATGGAGTTTATTTTGTCCCAATGAAGCTCCAGGTTTGGCTGATTGT 26321 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 |||||||| | | || || || |||||||||||| ||||| Sbjct 26322 TGGGGTGAAGCATTTGAACAACTTTATGAAAAGTATGAAAAGGAGG 26367 >seq26 Length=183063 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 |||||||| ||| | ||||| ||| | || || || ||| || |||||| Sbjct 76962 TTTATTTGTGAGTCATTACCGGTAGCATTGATAGGAATGAATAGTGATATGATGAGTCAG 76903 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 |||||| | |||||||| |||||| | || || | | || |||| || ||| | Sbjct 76902 TATATTGAGTTTGTTGCGGATCGTTTGTTGGTTGCTTTGGGATATGAGAAATATTTCCAG 76843 Query 22852 G-TCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 ||| ||||| ||||| ||||||||||| ||||| | |||||||||||||| || || Sbjct 76842 TCTCGA-AATCCGTTTGATTGGATGGAACTCATTTCTTTGGAAGGAAAGACCAACTTTTT 76784 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGT 22946 || || |||| || ||||| ||||| || ||||| Sbjct 76783 TGAGAAGCGAGTGGGAGAATATCAAAAGGCTGGTGT 76748 >seq62 Length=89227 Score = 91.5 bits (100), Expect = 4e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 |||||||| || || |||||||| | | || || || ||||| | | |||| || Sbjct 47991 ATTTATTTTAGATGCTTTACCAGTTGCTTTGATAGGAATGAATGCGGGTTTAATGTC-AC 47933 Query 22791 A-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 | ||||| ||| | ||| ||||| ||||| | || |||||| ||||| Sbjct 47932 AGTATATAGAATATTGTGCTGATCGGTTATTACAGGCTCTAGGTTATCGTTCCTATTATC 47873 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | || ||||||||||| |||||||| | || || | |||| || |||||||| | Sbjct 47872 AAGTATCCAATCCATTTGATTGGATGGAGTTGATATCGTTACAAGGCAAAACCAATTTTT 47813 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 | |||| |||||| || ||||| |||| ||||| ||||||| Sbjct 47812 TTGAAAGAAGAGTAGGAGAATATCAAATGGCAGGAGTTATGG 47771 Score = 91.5 bits (100), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA--TTCGCGGAAC 22492 || || || || |||||| | | |||||||| || ||| | || || || || | Sbjct 48340 AAAAAGAAAGCGGATTGGTCTTTAAAATGGAT--ACGATGTTCCAGCAGTTTTGCTGAGC 48283 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 || | |||| ||||| | || ||||| || ||||||||||| | |||||| | || | Sbjct 48282 GTTTAGTTGCCTTTGCAGCAGTAGAAGGGATATTCTTTTCTGGTTCTTTTTGTTCCATAT 48223 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 ||||| |||| ||||| | | ||||| ||||| || || || |||||||| || | Sbjct 48222 TTTGGTTAAAGAAACGGGGCTTGATGCCTGGTCTTACTTTCTCCAATGAGTTGATATCAC 48163 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||| || | ||| || ||||| || Sbjct 48162 GAGATGAAGGCTTGCATTGTGAATTTGCTTG 48132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346369238606