Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq9 89.7 4e-13 seq19 84.2 2e-11 >seq6 Length=291449 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||||||| | || || | ||||| || | Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| |||||| || |||||||| || ||||| |||||| Sbjct 274379 GATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 274438 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| |||| | ||| ||||| | ||||| | |||| | |||||||| Sbjct 274439 CAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAAT 274498 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| ||||| | ||||| || || || || |||||||| Sbjct 274499 ATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGG 274545 >seq9 Length=249065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| || || | ||||| || | ||||| | ||||| || || Sbjct 143949 AAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCC 144008 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | ||||| |||||| ||||| |||||||| || || || Sbjct 144009 TCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGAC 144068 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATT 24165 ||||| | |||||| | || || || | ||||||| | | | ||||| | | Sbjct 144069 CAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAG--ACT 144126 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||||||||| ||||| |||| || ||||| | ||||| ||||| Sbjct 144127 ACAATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144178 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | ||||| | ||||| || || Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| |||||| ||||| ||||| || || || || ||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||||| | || || || | ||||||| | | ||||| | |||| Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAG--ACTATA 144585 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 | ||||||||||| ||||| |||| || ||||| | ||||| |||||||| ||| Sbjct 144586 ATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGACTCTAA 144641 >seq19 Length=190679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/270 (68%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 |||| || | | | |||||| |||| || | || || |||||| ||| || | | Sbjct 26352 TTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGCTTCATTGG 26293 Query 133068 GACACATCAATGACCATTTTTC-TCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTC 133126 |||| | || |||||| || |||| || || |||||||| || || || | Sbjct 26292 GACAAAATAAACTCCATTTCTCATCCTTTTCT-ACTCTTTTCATAAATAAATCGGGAACC 26234 Query 133127 CACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTT-TCAA 133185 || | || |||| ||||| || || | |||||| || || ||| || |||| Sbjct 26233 CATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCC-ATGATTCTTTCTCAA 26175 Query 133186 GTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTT 133245 || ||||| |||||| || |||||||||||||| | ||| | || ||||| ||||| Sbjct 26174 ATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTT 26115 Query 133246 CCTTTT---ACCTCCCTGATCCACATGTCT 133272 ||||| ||||| |||||||||| ||| Sbjct 26114 TCTTTTTCCTCCTCCTTGATCCACATATCT 26085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933731147115