Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9 145 5e-30 seq54 131 1e-25 seq6 129 4e-25 seq207 109 4e-19 seq101 109 4e-19 seq41 109 4e-19 seq19 109 4e-19 seq13 109 4e-19 seq303 105 4e-18 seq63 82.4 5e-11 >seq9 Length=249065 Score = 145 bits (160), Expect = 5e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || ||||||||||||||||| ||||| || ||| |||||||||||||| || ||| Sbjct 144178 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGAC 144119 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || || ||||| || ||||| || | |||||||| || | ||| Sbjct 144118 AAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144059 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| ||| || ||| || || | | ||||||| ||||||| Sbjct 144058 ATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 143999 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || | |||||||| || || || | || ||||| ||||| ||||| ||||| Sbjct 143998 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTTTTA 143946 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || ||||||||||||||||| ||||| || ||| ||||||||||| || || ||| Sbjct 144634 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144575 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || || ||||| || ||||| || | |||||||| || | ||| Sbjct 144574 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144515 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||| ||||| | | ||||||| ||||||| Sbjct 144514 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACT 144455 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || || || | || ||||| |||||||||||| Sbjct 144454 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCATG 144407 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || ||||||||||||||||| ||||| || ||| ||||||||||| || || ||| Sbjct 144406 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144347 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || || ||||| || ||||| || | |||||||| || | ||| Sbjct 144346 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144287 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||| || || | | ||||||| ||||||| Sbjct 144286 ATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 144227 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || || || | || ||||| ||||| |||||| Sbjct 144226 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATG 144179 >seq54 Length=107229 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| ||||||| |||||||||||| |||||||| ||| || |||||||| || || Sbjct 11014 TTACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCT 11073 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | ||| |||| || | |||||| || ||||| |||| |||||||| || | Sbjct 11074 GATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGA 11133 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||||| || || ||| ||| || |||| | |||||| | ||| Sbjct 11134 GGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCT 11193 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | |||||||| || || || | |||||||| || || ||||| Sbjct 11194 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 >seq6 Length=291449 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| || | ||| |||||||| | ||| ||| || || ||||| ||||||| Sbjct 274547 TACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAG 274488 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | |||| || || || ||||||||||| || || | |||||||| | | Sbjct 274487 AAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAG 274428 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||| || |||||||| | || ||||| | ||||| Sbjct 274427 GAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAA 274368 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 274367 CTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq207 Length=5364 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||| ||||||||| | | |||||| || |||||||| Sbjct 655 AAGACCGTTCCCTTGGCTGTGGGTTCGCTAGAAGGAAAATAGGGACAGTGGGAATCTCGT 596 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 595 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 561 >seq101 Length=10288 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||| ||||||||| | | |||||| || |||||||| Sbjct 727 AAGACCGTTCCCTTGGCTGTGGGTTCGCTAGAAGGAAAATAGGGACAGTGGGAATCTCGT 786 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 787 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 821 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2880 CTCTCCTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2939 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2940 TTTCATATTTAGCCTT 2955 >seq41 Length=149690 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||| ||||||||| | | |||||| || |||||||| Sbjct 4480 AAGACCGTTCCCTTGGCTGTGGGTTCGCTAGAAGGAAAATAGGGACAGTGGGAATCTCGT 4539 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4540 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 4574 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| |||||||| |||| || |||||||||||||||||||||||||||||||||| | Sbjct 6633 CTCTCCTTTCAAAGTCCTTTCCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 6692 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 6693 TTTCATATTTAGCCTT 6708 >seq19 Length=190679 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||| ||||||||| | | |||||| || |||||||| Sbjct 185687 AAGACCGTTCCCTTGGCTGTGGGTTCGCTAGAAGGAAAATAGGGACAGTGGGAATCTCGT 185628 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 185627 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 185593 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 183533 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 183474 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 183473 TTTCATATTTAGCCTT 183458 >seq13 Length=208297 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||| ||||||||| | | |||||| || |||||||| Sbjct 5803 AAGACCGTTCCCTTGGCTGTGGGTTCGCTAGAAGGAAAATAGGGACAGTGGGAATCTCGT 5862 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5863 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 5897 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||| |||| || |||||||||||||||||||||||||||||||||| | Sbjct 7955 CTCTCTTCTCAAAGTCCTTTCCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 8014 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 8015 TTTCATATTTAGCCTT 8030 >seq303 Length=3911 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2377 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2318 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2317 TTTCATATTTAGCCTT 2302 >seq63 Length=104598 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || | |||| || || || ||||| |||||||||||| | | | || ||| Sbjct 60745 ACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCT 60686 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| || || |||||||| | ||||||||||| | |||| ||||| ||||| Sbjct 60685 AGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGT 60626 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | | |||||| | |||||||| || ||||| || || Sbjct 60625 ATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTC 60566 Query 38289 CCCGT 38293 || || Sbjct 60565 CCAGT 60561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945432420823