Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq62 214 2e-50 seq19 212 8e-50 seq26 188 9e-43 >seq62 Length=89227 Score = 214 bits (236), Expect = 2e-50 Identities = 378/548 (69%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 32697 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 32756 || || || ||||| || || || || ||||| | ||| || || || | |||||||||| Sbjct 48168 ATCAACTCATTGGAGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATG 48227 Query 32757 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 32816 || ||| || ||||||||||| || ||||||||||| |||||||||| | | ||| Sbjct 48228 GAACAAAAAGAACCAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCA 48287 Query 32817 CCATAACCGGCGCTGT--CAT-GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 32873 || ||| | ||| ||| ||||||| ||| || |||||| || |||||||| ||| Sbjct 48288 GCAAAACTG---CTGGAACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACA 48344 Query 32874 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 32933 |||| | | || || || | || | | ||||| ||||| || ||| Sbjct 48345 CAAGTAAGATTTTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAA 48404 Query 32934 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 32993 ||||| || | | | |||||||||||||| | ||||| || ||||| ||||| || Sbjct 48405 GTATCGATAAGTAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCA 48464 Query 32994 TAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33053 ||||| || | || |||| | || ||||| |||| ||| || |||| || |||||| Sbjct 48465 TAGAAACAACGCGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCA 48524 Query 33054 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33113 ||||| || || ||| ||||||||||| ||||| ||||| |||||| | || || Sbjct 48525 TTCACGATGCCATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCT 48584 Query 33114 TCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 33173 || || ||||||||| | ||||| |||| || |||||||| |||||| Sbjct 48585 GATGAATGGAGAGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTC 48644 Query 33174 CAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAA 33233 || || || || || |||||| | | ||| || | |||| || ||||| Sbjct 48645 CAGAAACTAGCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAAT 48704 Query 33234 ATAACAAA 33241 | |||||| Sbjct 48705 AAAACAAA 48712 >seq19 Length=190679 Score = 212 bits (234), Expect = 8e-50 Identities = 487/721 (68%), Gaps = 18/721 (2%) Strand=Plus/Minus Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 ||| | | |||| || | || |||||| || ||| || ||| ||||| ||||| Sbjct 26348 ATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGCTTCATTGGGACA 26289 Query 63043 CATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCA 63099 | || ||| | || |||||||| |||| ||||||||| | ||| |||| ||| Sbjct 26288 AAATAAACTCCATT-TC--TCATCCTTTTCTACTCTTTTCATAAATAAATCGGGAACCCA 26232 Query 63100 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63159 | | | ||| | ||||| | || || ||| || ||||| ||||||| | | ||| Sbjct 26231 TAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCTCAAATC 26172 Query 63160 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 | || | | |||||| | |||||| || ||||| || || || | | |||| | Sbjct 26171 TAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCT 26112 Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279 ||| |||||| ||||| | ||||| || || | |||| | |||| | ||| |||| Sbjct 26111 TTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCATAGGAAC 26052 Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 ||| ||||| || || |||||||| ||| ||||| | | ||||| |||| | Sbjct 26051 AATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTATATCATG 25992 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 || || | || || || || || ||||||| || | ||| |||| |||||| ||||| Sbjct 25991 AACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTTAAAGTATC 25932 Query 63400 ATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGT 63458 ||| || || || || || || |||| ||||| ||| ||||| ||| | | Sbjct 25931 ATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGAAACA---AGAGGATAACT 25876 Query 63459 GACGACT---AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515 || | || ||| |||||||| ||||| ||||| ||||| |||||||| ||||| || Sbjct 25875 GAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATTTTCGAG 25816 Query 63516 AAAGTAGATTGTACGTCTC-AATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63573 | | || || ||||| |||| ||| || | || | ||| ||||| || || || Sbjct 25815 ACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-TGAATACCAACAGC 25758 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 || | ||| ||||| || || |||| ||| | | ||| | | || || || Sbjct 25757 TACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACACGTAATAAATA 25698 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| ||| |||||||| || ||||| || | || ||||||||||| || |||||||| Sbjct 25697 GGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCATAAATAAT 25638 Query 63694 A 63694 | Sbjct 25637 A 25637 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62773 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 62832 ||| |||| || | || |||||||| || ||||| || | ||||||||| || || Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 62833 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 62892 ||| || ||||||||||| || || | || || ||| || ||||| || ||||| | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 62893 ACCAGTTTCAATCTGAGATTCTATAATCGC 62922 |||||||| || || | ||||| ||| || Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAGC 26462 >seq26 Length=183063 Score = 188 bits (208), Expect = 9e-43 Identities = 359/529 (68%), Gaps = 0/529 (0%) Strand=Plus/Plus Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 |||||||| || || || || | ||| || || | ||| | || || || || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 | ||| ||||| || || | |||||| | |||||||||||| ||| || |||||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 32837 || ||||| ||||| || ||||| || | | | ||| || || ||| | || Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG 77273 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| || |||||| | ||||| || | | |||||| || || || || | | Sbjct 77274 ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCA 77333 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || | | ||||| | | |||| || ||| ||||| || | |||| ||| || Sbjct 77334 AATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTT 77393 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 ||||||||||| ||||| || || ||||||||||| || || |||| || || | |||| Sbjct 77394 TCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATC 77453 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || |||||||| |||||| | || || || |||||||| | |||| Sbjct 77454 TGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCA 77513 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33137 || || |||||||| || || |||| || |||| | | ||| |||||||| Sbjct 77514 AAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCT 77573 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | | || | |||| ||| | |||||| | |||||||| || |||| Sbjct 77574 TCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 86.0 bits (94), Expect = 8e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| ||||| ||||| || || || ||||| || || || ||||| || || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAA-ATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| | | | |||| ||| | | ||||||| || | Sbjct 76817 TCCATCCAATCAAACGGATTTCGAG-ACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| | ||| || ||||| || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 32599 | || || | | | || || ||| |||| |||| ||| || || || Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATC 76986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628570466800