Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq54 120 3e-22 seq9 120 3e-22 >seq6 Length=291449 Score = 125 bits (138), Expect = 6e-24 Identities = 173/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || ||||| || ||| |||| ||| | ||||| || | ||| Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 25059 GACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| || || | || | ||| || |||||||| ||||| || || || Sbjct 274379 GATACAATCGAAAATGTGAAATCCAAGATTCA-AGATAAAGAAGGTATTCCTCCAGATCA 274437 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | ||||||||||||| || || || ||||| | | || | ||||| || Sbjct 274438 ACAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAA 274497 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATA 25236 ||| || ||||| || || ||||||| || | ||| |||||||||| ||||||| Sbjct 274498 TATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGG----TATTATA 274552 >seq54 Length=107229 Score = 120 bits (132), Expect = 3e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || | || || | ||||| || | || Sbjct 11244 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11185 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| | ||| ||| || || |||||||| ||||| |||||||| Sbjct 11184 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11125 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| | ||||| | ||| ||| | || || || Sbjct 11124 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11065 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTATAC 25237 |||||| ||||| || || || || || ||| | | || |||||||| || | ||| | Sbjct 11064 TATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGGTAACTGTTAAAA 11005 Query 25238 TATT 25241 |||| Sbjct 11004 TATT 11001 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || | || || | ||||| || | || Sbjct 11472 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11413 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| | ||| ||| || || |||||||| ||||| |||||||| Sbjct 11412 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11353 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| | ||||| | ||| ||| | || || || Sbjct 11352 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11293 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| ||||| || || || || || ||||| | | || ||||||| Sbjct 11292 TATTCAGAAAGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGGAA 11243 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || | || || | ||||| || | || Sbjct 11700 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11641 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| ||| | ||| ||| || || |||||||| ||||| |||||||| Sbjct 11640 TGATACTATTGAGAATGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11581 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || |||||| | ||||| | ||| ||| | || || || Sbjct 11580 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11521 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || || || || || || || ||||| | | || ||||||| Sbjct 11520 TATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGGAA 11471 >seq9 Length=249065 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||||||||| |||||| | || || || | || || | ||||| || | Sbjct 143948 AAAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACC 144007 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || ||||| || | ||| | || | ||| ||||| ||||| ||||| || | Sbjct 144008 CTCAGATACTATTGAAAACGTCAAGTCTAAGATTCAA-GACAAGGAAGGCATTCCCCCAG 144066 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | |||||||| || ||||| || ||||||| || ||| || || | Sbjct 144067 ACCAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACT 144126 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||||||||||||| || || || || || ||| Sbjct 144127 ACAATATTCAAAAAGAGTCTACCCTTCACTTGGTG 144161 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| |||||| | || || || | || || | ||||| || | || Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAA-GACAAGGAAGGTATTCCCCCAGACCA 144298 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || ||||| || ||||||| ||| ||| || || || || Sbjct 144299 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAA 144358 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||||||||| || || || || || ||| Sbjct 144359 TATTCAAAAAGAGTCTACCCTTCACTTGGTG 144389 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||| | || || || | || || | ||||| || | || Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGTATTCCCCCAGACCA 144526 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || ||||| || ||||||| ||| ||| || || || || Sbjct 144527 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAA 144586 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||||| || || || || || ||| | | | || |||||| Sbjct 144587 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGA 144635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325713246895