Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq62 289 3e-73 seq26 262 4e-65 >seq62 Length=89227 Score = 289 bits (320), Expect = 3e-73 Identities = 434/609 (71%), Gaps = 13/609 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| | ||| ||||| || ||| || ||||| ||||||||||||||||||||| | Sbjct 48123 TACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAG 48182 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || | ||| || | || || |||||||| | ||||||||| ||| |||| |||| Sbjct 48183 AAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCA 48242 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||||| ||||| ||||| || |||||||| || || | ||| || |||||| | ||| Sbjct 48243 GAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGCTGGA- 48301 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 || | ||||||||||||| |||||| ||||| || || | ||||| || ||||| Sbjct 48302 --ACATCGTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCG 48359 Query 93323 ATAGCGTTAAATAGGTAATCTCGC---TCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || |||| || | || ||| || || |||||| || || |||||||| | Sbjct 48360 ATGGCGTAGAACA---AACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGT 48416 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | || |||||||| ||||| ||||| ||||| || || || || || |||||||| | Sbjct 48417 AAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGC 48476 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 ||||| | | || ||||| | ||| | || | | |||||||| || || ||| Sbjct 48477 GCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCA 48536 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCAT-CTTTAAG 93558 || || ||||||||||| ||||| | ||| |||||| |||| ||| | || | || Sbjct 48537 TCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTC-TGATGAATGGAG 48595 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA-AAACGATG 93617 || |||||| || ||||| || || ||||||||||| || ||||| |||| | | Sbjct 48596 AGAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTA-G 48654 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| || ||| || | |||||||| | |||| || ||||||| ||||||| Sbjct 48655 CTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAAAC 48714 Query 93678 GATTAGGGT 93686 || ||| || Sbjct 48715 GACTAGTGT 48723 >seq26 Length=183063 Score = 262 bits (290), Expect = 4e-65 Identities = 378/531 (71%), Gaps = 3/531 (1%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || |||||||| ||| |||||||| || ||||| || | |||||| ||| || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 || ||||| | ||||||| || || | ||||||||| ||| |||| ||||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||| || || || || ||||||||||| | ||| || |||||| || | | | | Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAG-AGGATT 77271 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | ||||||| |||||||||| | || ||||||| ||||||||| | ||| || || Sbjct 77272 G--GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | ||||| | | || | | |||||| || || |||||||| | |||||||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| ||||| | ||| |||||||| ||||| ||||| || ||||||| ||||| | Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||||| || || || ||||||| ||| | || || || || || || ||||| | Sbjct 77450 AATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGA 77509 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 |||||| |||||||||| || || ||||| |||||| | || | || | ||| Sbjct 77510 TGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCA 77569 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 ||| | || | || | ||| | |||||| |||||||||| || || Sbjct 77570 ATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGC 77620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857785990920