Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 150 2e-31 seq54 105 6e-18 seq63 87.8 2e-12 >seq9 Length=249065 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| ||||| || ||| | || || || || | ||||||||||| ||| | Sbjct 143948 AAAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACC 144007 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | ||||| | || | |||| || |||||||||||||| || ||||| || || Sbjct 144008 CTCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGA 144067 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||||| | || ||||| || |||||||| || ||| ||| || | || || || Sbjct 144068 CCAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTA 144127 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| ||||||||||| || ||| | || || || ||||| ||| | ||||| Sbjct 144128 CAATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144178 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || | ||||||||||| ||| || | Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || |||||||||||||| |||||||| || || ||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || |||||||| || ||| || || | || || || || Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||| | || || || ||||| ||| | ||||| Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144406 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || | ||||||||||| ||| || | Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || |||||||||||||| |||||||| || || ||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || |||||||| || ||| || || | || || || || Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144587 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||| | || || || ||||| ||| | ||||| Sbjct 144588 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144634 >seq54 Length=107229 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || || || | ||||||||||| ||| | | Sbjct 11243 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11184 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||| || ||||| || || || ||||| || || ||| Sbjct 11183 GATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAA 11124 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | || || || || | || || || || Sbjct 11123 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAAT 11064 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| || || | || || || ||||| || | |||||| Sbjct 11063 ATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGGT 11016 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || || || | ||||||||||| ||| | | Sbjct 11471 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11412 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||| || ||||| || || || ||||| || || ||| Sbjct 11411 GATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAA 11352 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | || || || || | || || || || Sbjct 11351 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAAT 11292 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || || | || || || |||| ||| | ||||| Sbjct 11291 ATTCAGAAAGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11245 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || || || | ||||||||||| ||| | | Sbjct 11699 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11640 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| ||| || ||||| || || || ||||| || || ||| Sbjct 11639 GATACTATTGAGAATGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAA 11580 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | || || || || | || || || || Sbjct 11579 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAAT 11520 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| ||| | ||||| Sbjct 11519 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11473 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || || || | ||||||||||| ||| | | Sbjct 11927 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11868 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||| || ||||| || || || ||||| ||||| ||| Sbjct 11867 GATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGACCAA 11808 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | || || || || | || || || || Sbjct 11807 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTATAAT 11748 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| ||| | ||||| Sbjct 11747 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11701 >seq63 Length=104598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| ||||| || || |||||||||||| | |||||||| ||||| Sbjct 60621 AAGATACAAGACAAGGAAGGTATCCCTCCGGATCAACAACGTTTGATATTTGCAGGCAAG 60680 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || |||| ||| | || | || ||||| || || || ||||||||||| Sbjct 60681 CAACTAGAAGATGGAAGAACTTTGTCTGATTATAATATCCAGAAAGAATCCAC 60733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725785016645