Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-13 seq1 84.2 4e-11 >seq13 Length=208297 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| Sbjct 152786 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGACCCCCAC 152729 >seq1 Length=465833 Score = 84.2 bits (92), Expect = 4e-11 Identities = 179/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 218790 CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTT 218849 ||||||||||||| ||||| || || ||||| || ||||||||| | ||||| || Sbjct 41753 CGGTCAGTTTGGTACTCGTTTACAAGGCGGAAAAGACGCTGCTTCTGCTCGTTATATATT 41694 Query 218850 TA-CAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTA 218908 || || | ||| | ||| | || || | | || | || ||||||| | ||| Sbjct 41693 TACCAGACTTG-CTCCCATTACACGTTATCTCTTTCCAGAAGCAGATGATGCCGTACTTC 41635 Query 218909 AGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGT 218968 | ||| | || || ||||| |||||||| ||| | | ||| ||| |||||| Sbjct 41634 ACTATTTAGAAGAAGATGGACTATCGATTGAACCCAATTATTATTGTCCTATTATTCCTC 41575 Query 218969 TTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTT 219028 | | | || || ||||| | |||||||| || || | |||| || |||||| || Sbjct 41574 TCGTTTTAGTGAACGGTGCTGAAGGTATCGGTACTGGATGGTCTACTAACGTTCCTTGTT 41515 Query 219029 ACAATCCCAAGGACATCATTGACAA 219053 |||| || || || ||||||| || Sbjct 41514 ACAACCCAAAAGATGTCATTGAAAA 41490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831097754153