Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 159 6e-34 seq6 159 6e-34 seq63 131 3e-25 seq54 131 3e-25 >seq9 Length=249065 Score = 159 bits (176), Expect = 6e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| || || ||||||||||| || || || || || | || | ||| Sbjct 144166 CGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCA 144107 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| ||||| || || || || || | | ||||||||| || ||||||||||||||| Sbjct 144106 TCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTG 144047 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||||||||| | ||||||| || || || |||| | ||| ||||| | || || Sbjct 144046 TCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATA 143987 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| ||||| || ||||| |||||| Sbjct 143986 GTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATT 143951 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | | ||||| |||||||| || || ||||||||||| || ||||| || || Sbjct 144635 TCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGA 144576 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| ||||| || || || || || | | ||||||||| || || Sbjct 144575 CAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 144516 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||||||||||||||| | |||||| || || || |||| | ||| || Sbjct 144515 AATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAAC 144456 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || || || || || ||||| ||||| || ||||||||||| Sbjct 144455 TTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| || || ||||||||||| || ||||| || || | || | ||| Sbjct 144394 CGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCA 144335 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| ||||| || || || || || | | ||||||||| || ||||| ||||||||| Sbjct 144334 TCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTG 144275 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||||||||| | ||||||| || || || |||| | ||| ||||| | || || Sbjct 144274 TCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATA 144215 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| || ||||| ||||| Sbjct 144214 GTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 >seq6 Length=291449 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| |||| || |||||||| ||||| |||||||| || || || || || || Sbjct 274531 CAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCGTC 274472 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| |||||||| ||||| || || ||||| ||||| || || ||||| ||||| || || Sbjct 274471 TTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTATC 274412 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||||||||| | || || ||||| || || | | ||| |||||||| || ||||| Sbjct 274411 TTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATGGT 274352 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | || || || ||||| ||||| Sbjct 274351 TTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq63 Length=104598 Score = 131 bits (144), Expect = 3e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| | ||||| ||||| ||||| |||||||| || | || || |||||||| Sbjct 60746 TACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTC 60687 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || ||||| || || ||||| | | |||||| || || || || |||||||||||||| Sbjct 60686 TAGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 60627 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| | ||| ||| || || || || | | || |||||||| || ||||| || Sbjct 60626 TATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTT 60567 Query 68432 TCCCGTGAGGGTCTTGA 68448 || || || |||| || Sbjct 60566 CCCAGTAAGTGTCTAGA 60550 >seq54 Length=107229 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | | |||| |||||||| || || ||||| || || || ||||| || | Sbjct 11699 TTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCG 11758 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || ||||| | || || || || || || | | |||||||||||| | Sbjct 11759 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAG 11818 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||| ||||||| ||||||| ||| || || || | | ||||| Sbjct 11819 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11878 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | || || || ||||| || || || || || || || |||||| Sbjct 11879 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617411718760