Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq54 107 2e-18 >seq9 Length=249065 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || || || | ||||| ||||||||||| || || || || ||||||| ||| Sbjct 144620 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATC 144561 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||||||||||| | || | ||| |||||||| || ||||| ||||| ||||| Sbjct 144560 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTC 144501 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | ||||| || || | || ||| || || | || | || Sbjct 144500 TTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 144441 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || ||||| || ||||| ||||||||| || Sbjct 144440 CTTCCCAGTGAGAGTCTTCACAAATATCTGCATGCCT 144404 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || || || | ||||| ||||||||||| ||||| || || |||||| ||| Sbjct 144164 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATC 144105 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||||||||||| | || | ||| |||||||| || ||||||||||| ||||| Sbjct 144104 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 144045 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | ||||| || || | || ||| || || | || | || Sbjct 144044 TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 143985 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAAT 114390 || || || ||||| || ||||| || ||||| ||||| Sbjct 143984 CTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTTTTAAT 143944 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || || || | ||||| ||||||||||| || || || || ||||||| ||| Sbjct 144392 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATC 144333 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||||||||||| | || | ||| |||||||| || ||||| ||||| ||||| Sbjct 144332 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTC 144273 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| || | | ||||| || || | || ||| || || | || | || Sbjct 144272 TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 144213 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || ||||| || ||||| || |||||| || Sbjct 144212 CTTCCCAGTGAGAGTCTTCACAAATATTTGCATGCCT 144176 >seq54 Length=107229 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 114146 TTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTT 114205 || ||| |||| || | || | ||| || || || | || || ||||| ||||| || Sbjct 11007 TTAACAGTTACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATT 11066 Query 114206 GTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTG 114265 || || | ||||||| |||||||||||||||||||| |||| | ||| ||||| Sbjct 11067 ATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTG 11126 Query 114266 GTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGT 114325 ||| |||||||| |||||||| || |||||| || | | |||| || || | Sbjct 11127 GTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGA 11186 Query 114326 GGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || || | || | || || || || |||||||| ||||| || ||||| Sbjct 11187 AGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||| || || || | ||||||| |||||||||||||||||| Sbjct 11275 GTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11334 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||| |||||||| |||||||| |||||||| || |||||| || Sbjct 11335 GCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11394 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | ||| || || | || | || || || || |||||| Sbjct 11395 ACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11454 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 11455 TTCACAAAGATTTGCAT 11471 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||| || || || | ||||||| |||||||||||||||||| Sbjct 11503 GTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11562 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||| |||||||| |||||||| |||||||| || |||||| || Sbjct 11563 GCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11622 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | ||| || || | || | || || || || |||||| Sbjct 11623 ACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11682 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 11683 TTCACAAAGATTTGCAT 11699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||| || || || | ||||||| |||||||||||||||||| Sbjct 11731 GTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCAAGTTGTTTACCA 11790 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||| |||||||| |||||||| |||||||| || |||||| || Sbjct 11791 GCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTG 11850 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | ||| || || | || | || || || || |||||| Sbjct 11851 ACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTT 11910 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 11911 TTCACAAAGATTTGCAT 11927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132182871996