Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq54 122 2e-22 seq9 116 9e-21 seq6 107 5e-18 seq63 98.7 2e-15 seq26 98.7 2e-15 >seq54 Length=107229 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||||||||| | || || || |||||||| | |||||| || || ||| Sbjct 11053 TCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11112 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| ||||| | || |||||||||||||| || || || | || ||||| Sbjct 11113 ATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTC 11172 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | ||||||||| || || || ||||| || || ||||| || || Sbjct 11173 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11232 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 11233 AAGATTTGCATT 11244 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||||||||| | || || || |||||||| | |||||| || || ||| Sbjct 11281 TCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11340 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| ||||| | || |||||||||||||| || || || | || ||||| Sbjct 11341 ATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTC 11400 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | ||||||||| || || || ||||| || || ||||| || || Sbjct 11401 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11460 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 11461 AAGATTTGCATT 11472 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||||||||| | || || || |||||||| | |||||| || || ||| Sbjct 11509 TCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11568 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| ||||| | || |||||||||||||| || || || | || || || Sbjct 11569 ATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACATTC 11628 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | ||||||||| || || || ||||| || || ||||| || || Sbjct 11629 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11688 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 11689 AAGATTTGCATT 11700 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||||||||| | || || || |||||||| | |||||| || || ||| Sbjct 11737 TCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11796 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | ||| ||||| || |||||||||||||| || || || | || ||||| Sbjct 11797 ATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTC 11856 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | ||||||||| || || || ||||| || || ||||| || || Sbjct 11857 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11916 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 11917 AAGATTTGCATT 11928 >seq9 Length=249065 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||||||||| | | || || || ||||| || ||||| || || || Sbjct 144370 TCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAA 144311 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| ||||| |||||| || ||||| || || || || || | || ||| Sbjct 144310 ATCAAACGTTGTTG---GTCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGACTTGACG 144254 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | ||| ||||| || || || |||||||| || |||||||| Sbjct 144253 TTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTC 144194 Query 288460 ACGAATATCTGCAT 288473 || ||||| ||||| Sbjct 144193 ACAAATATTTGCAT 144180 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||||||||| | | || || || ||||| || ||||| || || || Sbjct 144598 TCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAA 144539 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| ||||| |||||| || ||||| || || || || || | || || Sbjct 144538 ATCAAACGTTGTTGG---TCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACA 144482 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | ||| ||||| || || || |||||||| || |||||||| Sbjct 144481 TTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTC 144422 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 144421 ACAAATATCTGCAT 144408 >seq6 Length=291449 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||||||||| || | ||||| | ||||||||| || || ||||| || || Sbjct 274509 TCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAA 274450 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||||||| ||||| || ||||||||||| || || || | |||||| Sbjct 274449 ATAAGTCTCTGTTGA---TCTGGAGGAATACCTTCTTTATCTTGAATCTTGGATTTCACA 274393 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | ||| ||||| | || || || || || |||| || || Sbjct 274392 TTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTC 274333 Query 288460 ACGAATATCTGCAT 288473 || ||||| ||||| Sbjct 274332 ACAAATATTTGCAT 274319 >seq63 Length=104598 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||||||||| || | | || | ||| ||||||| ||| || ||||| || Sbjct 60728 TTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCTAGTTGCTTGCCTGCAAA 60669 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||||| ||||| || || || || || | || ||||| Sbjct 60668 TATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGTATCTTGGACTTTACGTT 60609 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 ||| |||| |||| | || ||||| | || || |||||||| || || |||| || Sbjct 60608 TTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTCCCAGTAAGTGTCTAGA 60550 >seq26 Length=183063 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 ||||||||||| |||||||| | | || | |||| || |||||| ||| | Sbjct 76971 GAAAAAGAGTTTATTTGTGAGTCATTACCGGTAGCATTGATAGGAATGAATAGTGATATG 76912 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAA 269232 |||| ||| ||||| || || || || |||||| | || || | || ||||||||| Sbjct 76911 ATGAGTCAGTATATTGAGTTTGTTGCGGATCGTTTGTTGGTTGCTTTGGGATATGAGAAA 76852 Query 269233 G-TGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | | || | ||||| |||| || | | |||||||| ||||| | |||||||||| Sbjct 76851 TATTTCCAGTCTCGAA--ATCCGTTTGATTGGATGGAACTCATTTCTTTGGAAGGAAAGA 76794 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342 | ||||| || || ||||| || | || |||||| |||||||| |||| Sbjct 76793 CCAACTTTTTTGAGAAGCGAGTGGGAGAATATCAAAAGGCTGGTGTAGTGAA 76742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647855498574