Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq54 118 1e-21 seq9 93.3 4e-14 seq19 91.5 1e-13 >seq54 Length=107229 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| ||||| || || |||| | || || ||||| Sbjct 11260 AGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCT 11319 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || || ||| | || | || || ||||| ||||||||||||||||| ||| Sbjct 11320 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCT 11379 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 ||||| ||| ||| || ||| | |||||| | || ||||| | ||| | ||| Sbjct 11380 TGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11439 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||| || || ||||||||| Sbjct 11440 TTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || ||||| || || |||| | || || ||||| Sbjct 11488 AGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCT 11547 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || || ||| | || | || || ||||| ||||||||||||||||| ||| Sbjct 11548 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCT 11607 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 ||||| ||| ||| ||| ||| | |||||| | || ||||| | ||| | ||| Sbjct 11608 TGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11667 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||| || || ||||||||| Sbjct 11668 TTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| ||||| || || |||| | || || |||||||||| || Sbjct 11041 TGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGT 11100 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || || ||||| ||||||||||||||||| |||||||| ||| Sbjct 11101 TTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTT 11160 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | |||||| | || ||||| | ||| | ||||| || || Sbjct 11161 GACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTA 11220 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | |||||| || || ||||||||| Sbjct 11221 AGAGTTTTCACAAAGATTTGCATT 11244 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || ||||| || || || | | || || ||||| Sbjct 11716 AGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCT 11775 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || || ||| | || | || || ||||||||||||||||||||||| ||| Sbjct 11776 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCT 11835 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 ||||| ||| ||| || ||| | |||||| | || ||||| | ||| | ||| Sbjct 11836 TGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11895 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||| || || ||||||||| Sbjct 11896 TTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 >seq9 Length=249065 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||||||||| ||||| |||| | || || | ||||| | ||| Sbjct 144154 TGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCCAACTGT 144095 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| |||| | || || ||||| || ||||| ||||| || ||||| || || Sbjct 144094 TTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTA 144035 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||||| || || ||||| | ||| | ||||| || || Sbjct 144034 GACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTG 143975 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| || || || ||||||||||| Sbjct 143974 AGAGTCTTCACAAATATTTGCATTTT 143949 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||||||||| || || |||| | || || | ||||| | ||| Sbjct 144382 TGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGT 144323 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| |||| | || || ||||| || ||||| ||||| || ||||| || || Sbjct 144322 TTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTA 144263 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||||| || || ||||| | ||| | ||||| || || Sbjct 144262 GACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTG 144203 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || |||||||| Sbjct 144202 AGAGTCTTCACAAATATTTGCAT 144180 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||||||||| || || |||| | || || | ||||| | ||| Sbjct 144610 TGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGT 144551 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| |||| | || || ||||| || ||||| ||||| || ||||| || || Sbjct 144550 TTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTG 144491 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | ||||| || || ||||| | ||| | ||||| || || Sbjct 144490 GACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTG 144431 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || || ||||| Sbjct 144430 AGAGTCTTCACAAATATCTGCAT 144408 >seq19 Length=190679 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/175 (73%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 154901 TTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTT 154960 || ||| | ||||||||| ||||| || ||||| ||| | || |||||||| || || Sbjct 26264 TTCTACTCTTTTCATAAATAAATCGGGAACCCATAAACCATAAAACAAATCTCGTGCTCG 26205 Query 154961 TTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAAT-CATATATGTCGGCGTGCC 155019 || ||||| || ||| ||| | | || || |||||| || | || ||||| |||| Sbjct 26204 ATTTTCTTCCTTTCC-ATGATTCTTTCTCAAATCTAAAAATTCAAAAATATCGGCATGCC 26146 Query 155020 ACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCTCCT---TGATCCAC 155071 | ||||| ||||| | || | || ||||| | |||||||||| |||||||| Sbjct 26145 AAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTTTTTCCTCCTCCTTGATCCAC 26091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642095672520