Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9 118 8e-22 seq54 104 2e-17 seq63 84.2 2e-11 >seq9 Length=249065 Score = 118 bits (130), Expect = 8e-22 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || | ||| | || || || ||||||||||| |||||||| || ||||| || Sbjct 144180 TGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTC-- 144123 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| || || | ||||| || ||||| ||||| | |||||||| |||||||| Sbjct 144122 TGACAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGG 144063 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||||||||| ||| || || || |||| |||||||| ||| Sbjct 144062 GGGAATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTC 144003 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15183 || || | ||||| || || || || ||||| || ||||| |||||||| ||| || Sbjct 144002 AACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTTTTAA 143945 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || || ||||||||||| |||||||| || || || || ||| || || | | Sbjct 144619 AACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTC--TGACAAAGTACGACCAT 144562 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||| ||||| | |||||||| |||||||| ||||| |||||||||| Sbjct 144561 CTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGT 144502 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| ||| || ||| |||| |||||||| ||| || || | ||||| | Sbjct 144501 CTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAG 144442 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || ||||| || ||||| Sbjct 144441 TCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || | ||| | || || || ||||||||||| |||||||| || || || || Sbjct 144408 TGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTC-- 144351 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| || || | ||||| || ||||| ||||| | |||||||| |||||||| Sbjct 144350 TGACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGG 144291 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||||||||| ||| || || || |||| |||||||| ||| Sbjct 144290 GGGAATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTC 144231 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 144230 AACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 >seq54 Length=107229 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || || || || || ||| | | ||||||| Sbjct 11719 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCA 11778 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || ||||| ||||||||| ||||||||||| || || Sbjct 11779 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGT 11838 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || |||||||| | |||||| || | ||||| || || Sbjct 11839 ATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11898 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 ||||| |||||||| ||||| |||||||| |||||| Sbjct 11899 CCTGTAAGAGTTTTCACAAAGATTTGCATTCTTGAAA 11935 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| || || ||||| || || || || || ||| | | ||||| Sbjct 11032 AACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCT 11091 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| ||||| | || ||||| |||||||| ||||||||||| || || Sbjct 11092 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCT 11151 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || || || | || |||||||| | |||||| || | ||||| || Sbjct 11152 TGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11211 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||| ||||| |||||||| Sbjct 11212 TTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || ||||| || || || || || ||| | | ||||||| Sbjct 11263 ACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCA 11322 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || ||||| |||||||| ||||||||||| || || Sbjct 11323 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGT 11382 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || |||||||| | |||||| || | ||||| || || Sbjct 11383 ATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11442 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| ||||| |||||||| Sbjct 11443 CCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || || || || || ||| | | ||||||| Sbjct 11491 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCA 11550 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || ||||| |||||||| ||||||||||| || || Sbjct 11551 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGT 11610 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || |||||||| | |||||| || | ||||| || || Sbjct 11611 ATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11670 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||| ||||| |||||||| Sbjct 11671 CCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 >seq63 Length=104598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || ||||| || || || ||||| | | |||| | ||||||| ||| ||||| Sbjct 60733 GTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCTAGTTGCTTGCCT 60674 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 || |||||||||| ||||| || || || ||||||||||| || ||| ||| Sbjct 60673 GCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGTATCTTGGACTTT 60614 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 || |||| ||||||||| | || || || || |||||||| || || || || || Sbjct 60613 ACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTCCCAGTAAGTGT 60555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390113975405