Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq54 109 5e-19 seq9 98.7 9e-16 seq6 91.5 1e-13 seq19 84.2 2e-11 seq393 82.4 7e-11 seq63 82.4 7e-11 >seq54 Length=107229 Score = 109 bits (120), Expect = 5e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | || | |||||| | || || ||||| || || || |||||||| || || Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTC--TG 11074 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | | || || || | |||||| || || | || || ||||| ||||| || | Sbjct 11075 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11134 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 |||| |||||||||||||| || ||| |||| || | || | || || |||| || Sbjct 11135 GAATTCCTTCTTTATCTTGTATCTTTGACTTGA-CGTTCTCAATAGTATCAGAAGGTTCT 11193 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || || || |||||||| ||||| |||||||| Sbjct 11194 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | | || ||| | || || ||||| ||||| || |||||||| || Sbjct 11470 ATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTC- 11528 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || || | |||||| || || | || || ||||| ||||| | Sbjct 11529 -TGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAG 11587 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||||||||| || ||| |||| || | || || |||| | Sbjct 11588 GAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTT 11647 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||||| || || || || |||||||| ||||| |||||||| Sbjct 11648 CTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | | || ||| | || || ||||| ||||| || |||||||| || Sbjct 11698 ATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCC 11757 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | |||||| || || | || || ||||| ||||| || Sbjct 11758 GATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGA 11817 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| |||||||||||||| || ||| |||| || | || | || || |||| || Sbjct 11818 GGAATTCCTTCTTTATCTTGTATCTTTGACTTGA-CGTTCTCAATAGTATCAGAAGGTTC 11876 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || || || |||||||| ||||| |||||||| Sbjct 11877 TACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11927 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | | || ||| | || || ||||| || || || |||||||| || Sbjct 11242 ATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTC- 11300 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || || || | |||||| || || | || || ||||| ||||| | Sbjct 11301 -TGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAG 11359 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| |||||||||||||| || ||| |||| || | || | || || |||| Sbjct 11360 GAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGA-CGTTCTCAATAGTATCAGAAGGT 11418 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||||| || || || || |||||||| ||||| |||||||| Sbjct 11419 TCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 >seq9 Length=249065 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--A 45185 |||||| | || || || || || ||||| ||||| || || |||| | | | Sbjct 144164 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTC--TGACAAAGTACGGCCA 144107 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| ||||| || || | ||||| ||||| ||||| || ||||||||||| || Sbjct 144106 TCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTG 144047 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| ||| | || || || | || ||||| ||||||| Sbjct 144046 TCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATA 143987 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || ||||| |||||||| Sbjct 143986 GTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 143952 >seq6 Length=291449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | | |||||| || | ||| | || || || || |||||||||||||| Sbjct 274548 ATACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCA 274489 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||| || ||||| || | || | || || || || || Sbjct 274488 GAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGA 274429 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||||||||| || ||| | ||| | || || |||| || Sbjct 274428 GGAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCA 274369 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || || | ||||| ||||| |||||||| Sbjct 274368 ACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq19 Length=190679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 |||| | ||| ||||| | ||||| |||| || || ||||| |||||||| ||||| Sbjct 26464 TATTTTAGAAGCACAAATAGAAACTGGAAATCCATATATGCTTTACAAAGATCATTGCAA 26523 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||||||| |||||| ||||||||||| || |||||||||| | || | ||||| Sbjct 26524 TAGGAAAAGCAATCAACAAAACTTGGGAACTATTCGATGTAGTAATTTGTGTACTGAAAT 26583 Query 123707 TATCGAATA 123715 | | |||| Sbjct 26584 TGTACAATA 26592 >seq393 Length=2618 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||||||||||||| |||| | ||| | |||||| || ||| ||||| ||||| Sbjct 2 TTATCTTGAATTTTTCGTTTCACGTTTTCGATCGTGTCGTTAGGCTCTACTTCCAGAGTG 61 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||||||||| || ||||||||||| | |||||| Sbjct 62 ATGGTTTTGCCGGTAAGCGTTTTTACAAATACTTGCAT 99 >seq63 Length=104598 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || ||||| || |||||||||||||| | ||| | ||| || | ||| Sbjct 60739 TGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCTAGTTGC 60680 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| ||||||| ||||| || ||||| || || ||||| || ||||| || || Sbjct 60679 TTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGTATCTTG 60620 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | || ||||||| ||| ||||| | ||||| || || || || Sbjct 60619 GACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTCCCAGTA 60560 Query 45318 AGAGT 45322 || || Sbjct 60559 AGTGT 60555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000753532680